JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LDHAL6A_chr11_18450856_18484601	1/1	a0001	332	415	96	77	188	16	36	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	a0002	332	3	0	3	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	a0003	332	1	0	0	0	0	1	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6B_chr15_59201843_59213588	1/1	a0001	381	204	46	48	82	9	17	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	a0002	381	191	17	30	112	6	26	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	a0003	381	36	15	6	12	1	2	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	a0004	381	5	5	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	a0005	381	5	5	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	a0006	381	3	0	1	0	2	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	a0007	381	1	0	0	0	0	1	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	a0008	381	1	1	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	a0009	381	1	0	1	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	a0010	381	1	1	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHA_chr11_18389563_18413425	1/1	a0001	332	389	94	70	168	14	41	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	a0002	332	1	0	0	0	0	1	copy fasta	LDHA	chr11	18389563	18413425
LDHB_chr12_21630342_21662842	1/1	a0001	334	325	92	68	110	14	39	copy fasta	LDHB	chr12	21630342	21662842
LDHB_chr12_21630342_21662842	0/0	a0002	334	1	0	0	0	0	1	copy fasta	LDHB	chr12	21630342	21662842
LDHC_chr11_18407318_18457063	1/1	a0001	332	331	79	58	154	8	30	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	a0002	332	9	9	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	a0003	332	2	0	2	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	a0004	332	2	2	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	a0005	332	2	2	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	a0006	332	1	0	0	1	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	a0007	332	1	0	0	1	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHD_chr16_75106864_75121780	1/1	a0001	484	438	95	72	206	18	45	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0002	484	7	0	3	4	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0003	484	3	0	1	0	0	2	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0004	484	1	1	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0005	484	1	0	0	1	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0006	484	1	1	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0007	484	1	0	0	1	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0008	484	1	0	0	1	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0009	484	1	0	0	0	0	1	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0010	484	1	0	1	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0011	484	1	0	1	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0012	484	1	1	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	a0013	484	1	0	0	1	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDLRAD1_chr1_54002298_54023186	1/1	a0001	205	382	89	66	175	16	34	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	a0002	205	7	0	0	7	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	a0003	205	6	6	0	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	a0004	152	1	1	0	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	a0005	205	1	0	0	1	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	a0006	188	1	0	0	0	0	1	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	a0007	205	1	0	0	0	0	1	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	a0008	205	1	0	0	1	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD2_chr1_21807265_21830225	0/0	a0001	272	287	44	58	136	15	34	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	1/1	a0002	272	160	52	27	62	3	14	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	a0003	272	2	0	0	2	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	a0004	272	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	a0005	272	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225