JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LDLRAD2_chr1_21807265_21830225	0/0	a0006	272	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	a0007	272	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	a0008	272	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD3_chr11_35939062_36237136	1/1	a0001	345	212	70	40	66	6	28	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	a0002	345	14	5	3	4	0	2	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	a0003	345	6	5	1	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	a0004	345	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	a0005	345	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	a0006	345	1	0	0	1	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	a0007	345	1	0	0	1	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD4_chr18_13213760_13657751	1/1	a0001	306	176	72	24	52	10	16	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	a0002	306	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	a0003	306	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAP1_chr1_25538606_25573886	1/1	a0001	308	194	59	37	69	7	20	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	a0002	308	159	31	31	69	4	24	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	a0003	308	4	4	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	a0004	308	3	0	2	0	1	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	a0005	308	2	2	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	a0006	308	1	1	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	a0007	308	1	1	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLR_chr19_11084463_11138820	1/1	a0001	860	327	73	54	150	8	40	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	a0002	860	24	16	6	0	2	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	a0003	860	3	0	0	3	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	a0004	860	2	2	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	a0005	860	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	a0006	860	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDOC1_chrX_141168235_141182129	1/1	a0001	146	328	78	63	142	9	34	copy fasta	LDOC1	chrX	141168235	141182129
LEAP2_chr5_132868668_132880046	1/1	a0001	77	423	93	69	203	14	42	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	a0002	77	6	5	1	0	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	a0003	77	5	0	0	5	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	a0004	77	2	0	2	0	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LECT2_chr5_135941904_135959983	0/1	a0001	151	267	48	42	141	10	25	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	1/0	a0002	151	180	45	22	91	8	13	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	a0003	151	3	0	3	0	0	0	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	a0004	151	2	1	1	0	0	0	copy fasta	LECT2	chr5	135941904	135959983
LEF1_chr4_108042548_108173932	1/1	a0001	399	257	90	45	75	16	29	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	a0002	399	3	0	0	3	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	a0003	399	2	0	0	1	0	1	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	a0004	399	1	0	0	1	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	a0005	399	1	0	1	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEFTY1_chr1_225881282_225894146	1/1	a0001	366	224	41	41	104	10	26	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0002	366	114	13	28	55	6	12	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0003	366	24	0	1	20	0	3	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0004	366	23	23	0	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0005	366	23	4	0	18	0	1	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0006	366	17	0	4	13	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0007	366	13	10	3	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0008	366	6	3	0	3	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0009	366	3	3	0	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0010	366	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146