Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD18B_chr9_33519251_33578013	0/1	a0001	1113	161	27	26	82	7	18	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0002	1113	61	7	13	31	3	7	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	1/0	a0003	1113	61	24	14	20	0	2	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0004	1113	31	2	9	13	2	5	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0005	1113	12	1	2	5	1	3	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0006	1113	10	9	1	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0007	1113	8	8	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0008	1113	4	0	2	0	1	1	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0009	1113	2	1	1	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0010	1113	2	0	2	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0011	1113	2	0	0	2	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0012	1113	2	2	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0013	1113	2	0	2	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0014	1113	1	0	0	0	0	1	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0015	1113	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0016	1113	1	0	0	1	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0017	1113	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0018	1113	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0019	1113	1	0	0	0	0	1	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0020	1113	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0021	1113	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0022	1113	1	0	1	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0023	1113	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0024	1113	1	0	1	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0025	1113	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0026	1113	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0027	1113	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0028	1113	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	a0029	1066	1	1	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD1_chr10_90907096_90926087	1/1	a0001	319	461	90	77	230	16	46	copy fasta	ANKRD1	chr10	90907096	90926087
ANKRD1_chr10_90907096_90926087	0/0	a0002	319	2	0	0	0	0	2	copy fasta	ANKRD1	chr10	90907096	90926087
ANKRD1_chr10_90907096_90926087	0/0	a0003	319	2	2	0	0	0	0	copy fasta	ANKRD1	chr10	90907096	90926087
ANKRD1_chr10_90907096_90926087	0/0	a0004	319	1	0	1	0	0	0	copy fasta	ANKRD1	chr10	90907096	90926087
ANKRD1_chr10_90907096_90926087	0/0	a0005	268	1	0	1	0	0	0	copy fasta	ANKRD1	chr10	90907096	90926087
ANKRD1_chr10_90907096_90926087	0/0	a0006	319	1	0	1	0	0	0	copy fasta	ANKRD1	chr10	90907096	90926087
ANKRD20A1_chr9_67853931_67907394	0/0	a0001	823	5	4	0	1	0	0	copy fasta	ANKRD20A1	chr9	67853931	67907394
ANKRD20A1_chr9_67853931_67907394	0/0	a0002	378	1	0	0	1	0	0	copy fasta	ANKRD20A1	chr9	67853931	67907394
ANKRD20A1_chr9_67853931_67907394	0/0	a0003	823	1	1	0	0	0	0	copy fasta	ANKRD20A1	chr9	67853931	67907394
ANKRD20A1_chr9_67853931_67907394	0/0	a0004	823	1	1	0	0	0	0	copy fasta	ANKRD20A1	chr9	67853931	67907394
ANKRD20A1_chr9_67853931_67907394	1/0	a0005	823	1	0	0	0	0	0	copy fasta	ANKRD20A1	chr9	67853931	67907394
ANKRD22_chr10_88814896_88856844	1/1	a0001	191	375	65	68	186	16	38	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	a0002	191	29	21	6	2	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	a0003	191	14	12	2	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD23_chr2_96832912_96849021	1/1	a0001	305	335	93	66	125	14	35	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	a0002	305	15	0	0	15	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	a0003	305	2	0	1	1	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	a0004	305	1	0	1	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	a0005	305	1	1	0	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	a0006	305	1	0	0	0	0	1	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	a0007	305	1	0	0	1	0	0	copy fasta	ANKRD23	chr2	96832912	96849021