JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LEFTY1_chr1_225881282_225894146	0/0	a0011	366	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0012	366	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0013	366	1	1	0	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0014	366	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0015	366	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	a0016	366	1	0	1	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY2_chr1_225931603_225946220	1/1	a0001	366	401	84	72	184	18	41	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	a0002	366	31	0	10	19	0	2	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	a0003	366	13	13	0	0	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	a0004	366	7	1	0	6	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	a0005	366	1	0	0	1	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	a0006	366	1	0	0	0	0	1	copy fasta	LEFTY2	chr1	225931603	225946220
LEKR1_chr3_156821353_157051129	1/1	a0001	692	225	57	48	84	10	24	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	a0002	692	13	13	0	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	a0003	692	3	1	0	0	2	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	a0004	692	2	0	2	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	a0005	692	1	1	0	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LELP1_chr1_153198430_153210120	1/1	a0001	98	464	90	82	226	16	48	copy fasta	LELP1	chr1	153198430	153210120
LEMD1_chr1_205376378_205427056	1/1	a0001	181	321	72	69	130	12	36	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	a0002	181	26	0	2	16	1	7	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	a0003	181	16	13	3	0	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	a0004	181	12	0	0	12	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	a0005	181	11	8	1	1	1	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	a0006	181	1	0	1	0	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	a0007	181	1	1	0	0	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	a0008	181	1	0	0	1	0	0	copy fasta	LEMD1	chr1	205376378	205427056
LEMD1_chr1_205376378_205427056	0/0	a0009	181	1	0	0	0	0	1	copy fasta	LEMD1	chr1	205376378	205427056
LEMD2_chr6_33766213_33794130	1/1	a0001	503	358	98	66	147	16	29	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	a0002	503	38	1	9	21	2	5	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	a0003	503	2	0	0	2	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	a0004	503	1	1	0	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	a0005	503	1	0	1	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD3_chr12_65164583_65253355	1/1	a0001	911	392	88	55	194	12	41	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	a0002	911	1	0	1	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	a0003	911	1	0	0	1	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	a0004	911	1	0	0	0	0	1	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	a0005	911	1	0	0	1	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	a0006	911	1	1	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	a0007	911	1	1	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LENEP_chr1_154988586_154999315	1/1	a0001	61	306	90	62	98	14	40	copy fasta	LENEP	chr1	154988586	154999315
LENEP_chr1_154988586_154999315	0/0	a0002	61	2	2	0	0	0	0	copy fasta	LENEP	chr1	154988586	154999315
LENG1_chr19_54150161_54164721	0/1	a0001	264	410	96	76	177	18	42	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	a0002	264	4	0	3	0	0	1	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	a0003	264	2	0	0	2	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	a0004	264	1	0	0	1	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	a0005	264	1	0	0	0	0	1	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	a0006	264	1	1	0	0	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	a0007	264	1	0	1	0	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	a0008	264	1	1	0	0	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG8_chr19_54444199_54467016	0/1	a0001	800	395	94	66	177	14	43	copy fasta	LENG8	chr19	54444199	54467016