JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LEPR_chr1_65415668_65646559	0/0	a0009	1165	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	a0010	1165	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	a0011	1165	1	0	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	a0012	1165	1	0	0	0	0	1	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	a0013	1165	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEP_chr7_128236278_128262629	1/0	a0001	167	382	90	73	154	18	46	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	a0002	167	10	8	2	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	a0003	167	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	a0004	167	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	a0005	151	1	0	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LETM1_chr4_1806479_1861156	1/1	a0001	739	170	53	37	45	9	24	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0002	739	7	3	1	3	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0003	739	4	4	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0004	739	3	0	1	0	0	2	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0005	739	3	2	1	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0006	739	2	2	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0007	739	2	0	0	0	2	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0008	739	2	2	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0009	739	2	0	2	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0010	739	1	0	0	0	1	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0011	739	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0012	739	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0013	739	1	0	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	a0014	739	1	0	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM2_chr8_38381476_38414527	1/1	a0001	491	358	66	71	171	14	34	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	a0002	491	1	0	0	1	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	a0003	491	1	0	1	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	a0004	491	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	a0005	491	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	a0006	491	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	a0007	491	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETMD1_chr12_51043327_51065424	0/1	a0001	360	272	44	40	161	6	20	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	1/0	a0002	360	139	46	38	27	6	21	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	a0003	360	2	2	0	0	0	0	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	a0004	360	1	0	0	0	0	1	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	a0005	360	1	1	0	0	0	0	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	a0006	360	1	1	0	0	0	0	copy fasta	LETMD1	chr12	51043327	51065424
LEUTX_chr19_39773854_39791291	1/1	a0001	198	456	90	70	231	16	47	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	a0002	198	12	0	9	0	2	1	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	a0003	198	4	4	0	0	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	a0004	198	2	0	0	2	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	a0005	198	1	0	1	0	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	a0006	198	1	0	0	1	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEXM_chr1_54801063_54847252	1/0	a0001	418	194	25	39	108	7	14	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/1	a0002	418	145	35	26	49	9	25	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	a0003	418	15	1	0	14	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	a0004	418	11	6	0	5	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	a0005	418	6	1	0	5	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	a0006	418	3	3	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	a0007	418	3	3	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252