JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LEXM_chr1_54801063_54847252	0/0	a0008	418	1	0	0	1	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	a0009	418	1	1	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	a0010	418	1	1	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	a0011	418	1	0	1	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	a0012	418	1	0	0	0	0	1	copy fasta	LEXM	chr1	54801063	54847252
LFNG_chr7_2514774_2533429	1/1	a0001	379	413	99	80	174	16	42	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	a0002	379	1	1	0	0	0	0	copy fasta	LFNG	chr7	2514774	2533429
LGALS12_chr11_63501084_63521772	0/0	a0001	314	407	74	73	198	16	46	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	a0002	314	9	9	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	a0003	22	7	6	1	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	a0004	314	5	5	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	a0005	314	1	0	0	1	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	a0006	314	1	1	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	a0007	314	1	0	1	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	a0008	314	1	1	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	a0009	314	1	0	1	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	a0010	314	1	0	0	1	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS13_chr19_39597524_39612474	1/1	a0001	139	443	94	68	220	15	44	copy fasta	LGALS13	chr19	39597524	39612474
LGALS13_chr19_39597524_39612474	0/0	a0002	139	1	0	0	0	1	0	copy fasta	LGALS13	chr19	39597524	39612474
LGALS13_chr19_39597524_39612474	0/0	a0003	139	1	0	1	0	0	0	copy fasta	LGALS13	chr19	39597524	39612474
LGALS13_chr19_39597524_39612474	0/0	a0004	139	1	0	1	0	0	0	copy fasta	LGALS13	chr19	39597524	39612474
LGALS14_chr19_39699481_39714444	0/1	a0001	139	237	62	47	90	11	26	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	1/0	a0002	139	199	22	31	122	7	16	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	a0003	139	9	7	0	0	0	2	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	a0004	139	3	3	0	0	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	a0005	139	1	1	0	0	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	a0006	139	1	1	0	0	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	a0007	139	1	1	0	0	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	a0008	139	1	1	0	0	0	0	copy fasta	LGALS14	chr19	39699481	39714444
LGALS16_chr19_39650913_39665647	1/1	a0001	142	424	69	74	215	18	46	copy fasta	LGALS16	chr19	39650913	39665647
LGALS16_chr19_39650913_39665647	0/0	a0002	142	16	16	0	0	0	0	copy fasta	LGALS16	chr19	39650913	39665647
LGALS16_chr19_39650913_39665647	0/0	a0003	142	1	0	0	1	0	0	copy fasta	LGALS16	chr19	39650913	39665647
LGALS16_chr19_39650913_39665647	0/0	a0004	142	1	1	0	0	0	0	copy fasta	LGALS16	chr19	39650913	39665647
LGALS1_chr22_37670636_37684802	1/1	a0001	135	420	92	72	192	18	44	copy fasta	LGALS1	chr22	37670636	37684802
LGALS2_chr22_37565248_37585087	1/1	a0001	132	414	77	77	192	18	48	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	a0002	132	29	6	0	23	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	a0003	132	12	11	1	0	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	a0004	132	3	0	0	3	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	a0005	132	1	1	0	0	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	a0006	132	1	1	0	0	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS3BP_chr17_78966255_78984923	1/1	a0001	585	446	99	74	212	13	46	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	a0002	585	2	0	0	2	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	a0003	585	1	0	0	0	1	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	a0004	585	1	0	1	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	a0005	585	1	0	1	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	a0006	585	1	0	1	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	a0007	585	1	0	1	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	a0008	585	1	1	0	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	a0009	585	1	0	0	0	0	1	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	a0010	585	1	0	0	0	0	1	copy fasta	LGALS3BP	chr17	78966255	78984923