JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LGMN_chr14_92698809_92753627	1/1	a0001	433	322	61	57	148	17	37	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	a0002	433	87	34	20	29	1	3	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	a0003	433	4	0	0	4	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	a0004	433	2	0	0	0	0	2	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	a0005	433	2	1	1	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	a0006	433	2	2	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	a0007	433	1	0	0	1	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGR4_chr11_27360961_27477790	1/1	a0001	951	223	57	35	99	12	18	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	a0002	951	11	10	1	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	a0003	951	3	2	1	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	a0004	951	2	0	0	0	0	2	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	a0005	951	2	1	1	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	a0006	951	2	2	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	a0007	951	1	0	0	1	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR5_chr12_71434798_71591310	1/1	a0001	907	174	36	40	67	10	19	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0002	907	13	8	2	2	0	1	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0003	907	2	2	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0004	907	2	0	0	2	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0005	907	1	0	1	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0006	907	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0007	907	1	0	0	1	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0008	907	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0009	907	1	0	1	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0010	907	1	0	0	1	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0011	907	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0012	907	1	0	0	1	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	a0013	907	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR6_chr1_202188799_202324761	0/1	a0001	967	127	19	33	54	3	17	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	1/0	a0002	967	86	26	15	32	5	7	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0003	967	16	3	4	5	2	2	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0004	967	15	13	2	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0005	967	2	0	0	2	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0006	967	2	0	0	2	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0007	967	2	2	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0008	967	2	0	0	2	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0009	967	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0010	967	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0011	967	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0012	967	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0013	967	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0014	967	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0015	967	1	0	0	0	0	1	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0016	967	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0017	967	1	0	0	0	0	1	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	a0018	967	1	1	0	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGSN_chr6_63270951_63324983	1/1	a0001	509	281	54	59	132	12	22	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	a0002	509	20	19	1	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	a0003	509	3	1	2	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	a0004	509	3	3	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	a0005	509	2	2	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983