JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LGSN_chr6_63270951_63324983	0/0	a0006	509	2	0	0	2	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	a0007	509	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LHB_chr19_49010980_49022091	1/1	a0001	141	382	86	68	162	15	49	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	a0002	141	16	2	4	9	1	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	a0003	141	4	3	1	0	0	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	a0004	141	3	2	1	0	0	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	a0005	141	2	2	0	0	0	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	a0006	141	1	0	0	0	0	1	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	a0007	141	1	1	0	0	0	0	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	a0008	141	1	0	0	1	0	0	copy fasta	LHB	chr19	49010980	49022091
LHCGR_chr2_48681774_48760724	0/0	a0001	699	218	16	44	134	7	17	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	1/1	a0002	699	115	58	17	16	3	19	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	a0003	701	18	9	6	0	2	1	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	a0004	701	15	3	7	0	0	5	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	a0005	701	3	3	0	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	a0006	699	3	1	2	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	a0007	699	2	2	0	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHFPL1_chrX_112625648_112684938	1/1	a0001	220	242	75	41	97	7	20	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	a0002	220	2	2	0	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	a0003	220	1	1	0	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL2_chr5_78480230_78653772	1/1	a0001	228	250	84	58	76	12	18	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	a0002	228	2	0	0	2	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	a0003	228	2	0	0	2	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL3_chr7_104323603_104913561	0/0	a0001	236	86	26	24	22	8	6	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL4_chr3_9493361_9558822	1/1	a0001	247	359	90	66	147	16	38	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	a0002	247	1	0	0	1	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL5_chr6_35800352_35829070	1/1	a0001	219	384	95	70	164	13	40	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	a0002	219	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	a0003	219	1	0	0	0	1	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL6_chr13_39337892_39608193	0/0	a0001	200	241	80	36	103	4	18	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	a0002	200	1	0	0	1	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL7_chr22_24930098_24951694	1/1	a0001	200	380	80	71	174	12	41	copy fasta	LHFPL7	chr22	24930098	24951694
LHFPL7_chr22_24930098_24951694	0/0	a0002	200	27	3	3	18	0	3	copy fasta	LHFPL7	chr22	24930098	24951694
LHFPL7_chr22_24930098_24951694	0/0	a0003	200	6	6	0	0	0	0	copy fasta	LHFPL7	chr22	24930098	24951694
LHFPL7_chr22_24930098_24951694	0/0	a0004	200	6	6	0	0	0	0	copy fasta	LHFPL7	chr22	24930098	24951694
LHFPL7_chr22_24930098_24951694	0/0	a0005	200	1	1	0	0	0	0	copy fasta	LHFPL7	chr22	24930098	24951694
LHPP_chr10_124456823_124619141	0/1	a0001	270	213	36	47	81	11	37	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	1/0	a0002	270	25	1	8	7	3	5	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	a0003	270	19	18	1	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	a0004	270	1	0	0	1	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	a0005	270	1	1	0	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	a0006	270	1	0	0	1	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHX1_chr17_36932475_36949612	0/1	a0001	406	382	84	70	167	12	48	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	a0002	406	2	2	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	a0003	67	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX2_chr9_124006768_124038301	1/1	a0001	406	398	100	70	174	12	40	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	a0002	406	4	0	0	4	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX3_chr9_136191250_136210128	1/1	a0001	397	435	92	84	196	16	45	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	a0002	397	2	0	0	2	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	a0003	242	1	0	0	0	0	1	copy fasta	LHX3	chr9	136191250	136210128