JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LHX4_chr1_180225264_180283984	1/1	a0001	390	241	83	49	79	9	19	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	a0002	390	155	10	21	91	9	24	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	a0003	390	2	0	0	2	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	a0004	390	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	a0005	390	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	a0006	390	1	0	0	0	0	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	a0007	390	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX5_chr12_113457033_113476871	1/1	a0001	402	396	88	76	172	16	42	copy fasta	LHX5	chr12	113457033	113476871
LHX6_chr9_122197582_122233957	1/1	a0001	392	432	94	75	201	16	44	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	a0002	392	3	3	0	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	a0003	392	2	1	1	0	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX6_chr9_122197582_122233957	0/0	a0004	392	1	0	0	1	0	0	copy fasta	LHX6	chr9	122197582	122233957
LHX8_chr1_75129388_75166533	1/1	a0001	346	310	95	81	74	14	44	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	a0002	295	2	1	1	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX8_chr1_75129388_75166533	0/0	a0003	346	2	2	0	0	0	0	copy fasta	LHX8	chr1	75129388	75166533
LHX9_chr1_197912372_197940478	1/1	a0001	397	414	89	78	191	12	42	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	a0002	397	4	0	0	4	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	a0003	397	1	0	0	1	0	0	copy fasta	LHX9	chr1	197912372	197940478
LHX9_chr1_197912372_197940478	0/0	a0004	397	1	1	0	0	0	0	copy fasta	LHX9	chr1	197912372	197940478
LIAS_chr4_39454056_39484506	1/1	a0001	372	423	94	78	193	14	42	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	a0002	372	1	0	0	1	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAT1_chr17_405325_419666	1/1	a0001	423	157	8	42	81	9	15	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0002	423	75	17	12	35	0	11	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0003	413	55	20	2	15	5	13	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0004	443	44	5	0	38	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0005	433	11	9	2	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0006	433	9	3	5	0	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0007	433	9	8	1	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0008	433	7	0	7	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0009	343	6	1	1	0	1	3	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0010	413	6	6	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0011	413	5	4	1	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0012	423	5	1	4	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0013	423	4	0	0	4	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0014	423	3	0	0	2	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0015	463	3	0	1	2	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0016	423	3	1	0	1	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0017	383	3	3	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0018	31	2	2	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0019	423	2	0	2	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0020	413	2	0	0	2	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0021	433	2	2	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0022	433	2	2	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0023	443	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0024	413	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0025	423	1	0	0	0	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0026	423	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0027	423	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0028	423	1	0	0	0	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0029	403	1	0	0	0	0	1	copy fasta	LIAT1	chr17	405325	419666