Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD24_chr19_4177689_4229814	0/0	a0001	1146	77	7	20	38	5	7	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0002	1146	76	10	9	44	3	10	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0003	1146	62	16	13	24	4	5	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/1	a0004	1146	49	6	15	19	2	6	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0005	1146	13	13	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0006	1146	12	12	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0007	782	7	0	1	4	0	2	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0008	1146	7	7	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0009	1146	5	0	2	0	1	2	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	1/0	a0010	1146	5	0	2	0	2	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0011	1146	3	1	0	0	0	2	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0012	782	3	3	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0013	1146	3	0	3	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0014	1146	3	3	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0015	782	2	1	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0016	1146	2	0	0	1	0	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0017	1146	2	2	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0018	1146	2	0	0	2	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0019	782	2	0	0	0	1	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0020	1146	2	2	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0021	1146	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0022	1146	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0023	1146	1	0	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0024	1146	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0025	1146	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0026	1146	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0027	782	1	0	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0028	782	1	0	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0029	1146	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0030	782	1	0	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0031	782	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0032	1146	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0033	1140	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0034	1146	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0035	1146	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0036	1146	1	0	0	0	0	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0037	1146	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0038	1146	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	a0039	1146	1	0	0	0	0	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD26_chr10_26999116_27105494	0/1	a0001	1710	171	45	45	55	3	22	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0002	1710	64	9	9	40	1	5	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0003	1709	42	0	0	39	0	3	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0004	1710	28	0	0	26	2	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	1/0	a0005	1710	10	2	2	0	2	3	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0006	1710	7	6	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0007	1710	6	4	2	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0008	1710	5	5	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0009	1710	3	3	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0010	1710	2	2	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0011	1710	2	0	1	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494