JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LIG3_chr17_34975512_35014743	0/0	a0007	1009	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	a0008	1009	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG4_chr13_108202442_108220536	1/1	a0001	911	295	69	68	112	13	31	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	a0002	911	29	11	5	10	1	2	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	a0003	911	25	0	5	16	2	2	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	a0004	911	11	11	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	a0005	911	10	0	0	10	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	a0006	911	1	1	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	a0007	911	1	0	0	0	0	1	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	a0008	911	1	0	0	1	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	a0009	911	1	0	0	1	0	0	copy fasta	LIG4	chr13	108202442	108220536
LILRA1_chr19_54588632_54607381	0/1	a0001	489	291	38	67	134	17	34	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0002	489	77	10	9	56	0	2	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0003	489	30	21	3	0	1	5	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0004	489	12	1	2	8	0	1	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0005	489	5	5	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0006	489	4	4	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0007	489	3	0	0	0	0	3	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0008	489	3	0	0	3	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0009	489	3	3	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0010	489	3	0	0	3	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0011	489	2	2	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0012	489	2	1	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0013	489	2	2	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0014	489	2	0	0	2	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0015	489	2	0	0	0	0	2	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0016	489	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0017	489	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0018	489	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0019	489	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0020	489	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0021	489	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0022	489	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0023	489	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0024	489	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0025	489	1	0	0	1	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0026	489	1	0	0	0	0	1	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	a0027	489	1	0	0	1	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA2_chr19_54568790_54595287	0/1	a0001	483	358	58	72	174	16	37	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0002	483	17	6	4	1	1	5	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0003	483	8	1	3	0	1	3	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0004	483	5	5	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0005	483	5	5	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0006	483	4	3	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0007	483	4	4	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0008	483	3	0	0	0	0	3	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0009	483	2	2	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0010	483	2	2	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0011	470	2	1	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0012	483	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287