JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LILRA2_chr19_54568790_54595287	0/0	a0013	483	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0014	483	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0015	483	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0016	205	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0017	483	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0018	483	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0019	483	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0020	483	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0021	310	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0022	483	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0023	483	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0024	483	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0025	483	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0026	483	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0027	483	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	a0028	483	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA4_chr19_54328185_54344162	0/0	a0001	499	317	44	60	163	12	38	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/1	a0002	499	83	13	21	39	4	5	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0003	499	37	25	4	6	1	1	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0004	499	5	3	2	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0005	499	4	4	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0006	499	3	0	0	0	1	2	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0007	499	3	0	0	3	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0008	499	3	0	0	2	0	1	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0009	499	2	0	0	2	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0010	499	2	0	0	2	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0011	499	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0012	499	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0013	499	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0014	203	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0015	499	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0016	499	1	0	0	0	0	1	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0017	499	1	0	1	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0018	499	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0019	499	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0020	499	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0021	499	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	a0022	499	1	0	0	1	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA5_chr19_54302070_54318166	0/1	a0001	299	407	95	78	171	16	46	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	a0002	299	1	1	0	0	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	a0003	79	1	0	0	1	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA6_chr19_54231590_54247790	1/0	a0001	481	189	11	31	130	6	10	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0002	481	88	3	24	49	4	8	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0003	481	20	0	9	2	0	9	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0004	481	11	11	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0005	481	10	10	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0006	481	10	0	2	2	0	6	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0007	481	7	6	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0008	481	6	0	0	6	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0009	481	5	5	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790