JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LILRA6_chr19_54231590_54247790	0/0	a0060	481	1	0	0	0	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0061	481	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0062	481	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0063	481	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0064	481	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0065	481	1	0	0	0	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0066	481	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0067	481	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0068	481	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0069	481	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	a0070	481	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRB1_chr19_54625484_54643022	0/0	a0001	652	179	30	35	76	10	28	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0002	652	110	6	11	87	0	6	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0003	652	42	1	15	22	3	1	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0004	652	12	10	2	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0005	652	10	8	2	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0006	652	9	0	2	2	3	2	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0007	652	7	1	3	1	1	1	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0008	652	7	7	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0009	652	6	5	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0010	652	6	6	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0011	652	6	5	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0012	652	4	4	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0013	652	3	0	0	3	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0014	652	3	0	0	0	0	3	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0015	652	2	0	2	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0016	652	2	2	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0017	652	2	0	2	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/1	a0018	652	2	0	0	0	1	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0019	652	2	2	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0020	652	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0021	652	1	0	0	0	0	1	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0022	652	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0023	193	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0024	400	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0025	652	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0026	652	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0027	652	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0028	652	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0029	652	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0030	652	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0031	652	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0032	652	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0033	652	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0034	652	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0035	652	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0036	652	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0037	652	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0038	519	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	a0039	652	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022