JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LILRB3_chr19_54211278_54228007	0/0	a0052	631	1	0	0	0	0	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0053	631	1	1	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0054	631	1	0	0	0	0	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0055	631	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0056	631	1	0	1	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0057	428	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0058	631	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0059	631	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0060	631	1	1	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0061	631	1	0	0	0	0	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0062	631	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0063	631	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0064	631	1	0	0	0	0	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0065	631	1	0	0	0	0	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	a0066	631	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB4_chr19_54657985_54673718	0/0	a0001	448	57	0	4	49	0	4	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/1	a0002	448	47	2	10	28	2	4	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0003	448	40	1	8	25	0	6	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0004	448	23	0	8	12	2	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0005	448	21	0	10	8	1	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0006	448	21	2	5	14	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0007	448	19	10	3	2	0	4	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0008	448	19	0	3	10	0	6	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0009	448	17	0	1	15	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0010	448	15	6	2	4	3	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0011	448	14	5	3	4	0	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0012	448	14	2	5	6	1	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0013	448	14	7	1	1	2	3	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0014	448	14	7	2	4	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0015	448	14	1	0	11	0	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0016	448	13	3	1	9	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0017	448	10	3	0	3	1	3	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0018	448	9	2	1	4	2	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0019	448	8	0	3	3	1	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0020	448	7	1	0	5	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0021	448	7	2	3	2	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0022	409	6	6	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0023	448	5	4	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0024	448	4	0	0	4	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0025	448	3	0	0	3	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0026	448	3	3	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0027	448	3	3	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0028	448	3	1	0	1	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0029	448	3	2	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0030	448	2	0	1	0	1	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0031	409	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0032	409	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0033	448	2	0	1	0	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0034	448	2	0	0	2	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0035	448	2	1	0	0	0	1	copy fasta	LILRB4	chr19	54657985	54673718