JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LILRB4_chr19_54657985_54673718	0/0	a0036	448	2	0	0	0	0	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0037	448	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0038	448	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0039	409	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0040	409	2	0	1	0	1	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0041	448	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0042	448	2	0	0	0	0	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0043	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0044	409	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0045	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0046	448	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0047	409	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0048	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0049	448	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0050	448	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0051	409	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0052	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0053	448	1	0	0	0	1	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0054	448	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0055	448	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0056	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0057	448	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0058	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0059	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0060	448	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0061	448	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0062	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0063	409	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0064	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0065	409	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0066	409	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0067	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0068	448	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0069	448	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	a0070	409	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB5_chr19_54244421_54262273	0/0	a0001	591	336	83	48	174	10	21	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0002	591	41	4	16	8	4	9	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0003	591	37	7	14	10	1	5	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0004	591	34	0	2	29	2	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0005	591	6	3	1	0	0	2	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0006	591	5	0	0	2	0	3	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0007	591	4	1	0	0	1	2	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0008	591	2	0	0	2	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0009	591	2	0	0	2	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0010	591	2	0	0	2	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0011	105	1	0	0	1	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0012	591	1	0	1	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0013	591	1	0	0	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0014	591	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	a0015	591	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273