JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LIM2_chr19_51374909_51392974	1/1	a0001	173	431	98	83	184	18	46	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	a0002	173	2	0	0	2	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	a0003	173	2	2	0	0	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	a0004	169	1	0	0	1	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	a0005	173	1	0	1	0	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	a0006	173	1	0	0	1	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIMA1_chr12_50170788_50288520	1/1	a0001	759	291	80	53	113	9	34	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	a0002	759	1	0	0	0	1	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	a0003	759	1	0	1	0	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	a0004	759	1	0	0	1	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMCH1_chr4_41533157_41705044	1/1	a0001	1467	43	9	15	10	0	7	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0002	1467	42	12	13	7	0	10	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0003	1467	24	22	1	0	0	1	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0004	1467	10	6	2	0	0	2	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0005	1467	6	3	0	2	0	1	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0006	1467	5	5	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0007	1467	5	5	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0008	1467	4	0	0	4	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0009	1467	3	3	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0010	1467	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0011	1467	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0012	1467	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0013	1467	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0014	1467	1	0	0	1	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0015	1467	1	0	0	0	0	1	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0016	1467	1	0	1	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0017	1467	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0018	1467	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	a0019	1467	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMD1_chr3_45589751_45691341	1/1	a0001	676	351	87	73	145	14	30	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	a0002	676	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	a0003	676	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	a0004	676	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	a0005	676	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	a0006	676	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	a0007	676	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD2_chr17_63690888_63705125	1/1	a0001	127	391	91	70	178	14	36	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	a0002	127	1	1	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIME1_chr20_63731664_63744103	1/0	a0001	295	377	88	75	156	13	44	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/1	a0002	295	12	0	5	3	1	2	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/0	a0003	295	4	4	0	0	0	0	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/0	a0004	295	1	0	0	1	0	0	copy fasta	LIME1	chr20	63731664	63744103
LIMK1_chr7_74078804_74127525	1/1	a0001	647	286	78	49	109	16	32	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	a0002	647	6	0	0	6	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	a0003	647	3	2	1	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	a0004	647	2	0	0	2	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	a0005	647	2	0	0	2	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	a0006	647	1	1	0	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	a0007	647	1	1	0	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	a0008	647	1	0	0	1	0	0	copy fasta	LIMK1	chr7	74078804	74127525