JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LIMK2_chr22_31207298_31285080	1/1	a0001	638	285	45	49	153	11	25	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	a0002	638	66	39	18	1	1	7	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	a0003	638	3	0	0	0	2	1	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	a0004	638	3	0	1	0	0	2	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	a0005	638	1	0	0	0	0	1	copy fasta	LIMK2	chr22	31207298	31285080
LIMS1_chr2_108529470_108692246	1/1	a0001	337	242	80	44	63	12	41	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	a0002	337	2	2	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	a0003	337	1	0	0	1	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	a0004	337	1	0	0	0	0	1	copy fasta	LIMS1	chr2	108529470	108692246
LIMS2_chr2_127633426_127680530	1/1	a0001	341	346	96	78	114	14	42	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	a0002	341	1	0	0	1	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	a0003	341	1	0	0	1	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS3_chr2_109893688_109930625	0/0	a0001	398	16	15	1	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS3_chr2_109893688_109930625	0/0	a0002	398	4	3	1	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS3_chr2_109893688_109930625	0/0	a0003	398	1	1	0	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS3_chr2_109893688_109930625	0/0	a0004	398	1	1	0	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS4_chr2_110440883_110477816	0/0	a0001	398	64	8	17	21	6	12	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	a0002	398	19	12	1	4	0	2	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	a0003	398	4	3	0	1	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	a0004	398	1	0	0	1	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	a0005	398	1	0	0	1	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	a0006	398	1	1	0	0	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIN28A_chr1_26405817_26434728	1/1	a0001	209	374	96	78	132	16	50	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	a0002	209	1	0	0	1	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	a0003	209	1	0	0	1	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28B_chr6_104952107_105088332	1/1	a0001	250	277	83	38	106	16	32	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	a0002	250	1	1	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN37_chr19_35743576_35759519	1/1	a0001	246	399	87	66	188	12	44	copy fasta	LIN37	chr19	35743576	35759519
LIN37_chr19_35743576_35759519	0/0	a0002	246	7	7	0	0	0	0	copy fasta	LIN37	chr19	35743576	35759519
LIN37_chr19_35743576_35759519	0/0	a0003	246	2	0	0	0	2	0	copy fasta	LIN37	chr19	35743576	35759519
LIN52_chr14_74079956_74206493	1/1	a0001	112	352	82	68	146	12	42	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	a0002	112	2	2	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN54_chr4_82919603_83015823	1/1	a0001	749	302	76	43	143	6	32	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	a0002	749	1	0	0	1	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	a0003	749	1	0	1	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN7A_chr12_80787520_80942934	1/1	a0001	233	292	82	66	104	6	32	copy fasta	LIN7A	chr12	80787520	80942934
LIN7B_chr19_49109370_49123460	1/1	a0001	207	374	90	76	144	16	46	copy fasta	LIN7B	chr19	49109370	49123460
LIN7B_chr19_49109370_49123460	0/0	a0002	207	1	0	0	1	0	0	copy fasta	LIN7B	chr19	49109370	49123460
LIN7B_chr19_49109370_49123460	0/0	a0003	207	1	0	0	1	0	0	copy fasta	LIN7B	chr19	49109370	49123460
LIN7C_chr11_27489418_27511769	1/1	a0001	197	401	80	74	197	13	35	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	a0002	197	3	0	0	3	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	a0003	197	1	0	0	0	1	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	a0004	197	1	0	0	0	0	1	copy fasta	LIN7C	chr11	27489418	27511769
LIN9_chr1_226226157_226314164	1/1	a0001	542	361	76	69	162	8	44	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	a0002	542	1	0	1	0	0	0	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	a0003	542	1	0	0	1	0	0	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	a0004	542	1	0	0	1	0	0	copy fasta	LIN9	chr1	226226157	226314164
LINGO1_chr15_77608027_77637912	1/1	a0001	620	384	94	80	154	18	36	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	a0002	620	1	0	1	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	a0003	620	1	0	1	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912