Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCB5_chr7_20610667_20762008	0/0	a0024	1257	2	2	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0025	1257	2	2	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0026	1257	2	1	1	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0027	1257	2	2	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0028	1257	2	0	0	1	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0029	1257	2	0	2	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0030	1257	2	0	0	0	2	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0031	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0032	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0033	1257	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0034	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0035	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0036	1257	1	0	0	0	1	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0037	1257	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0038	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0039	1257	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0040	590	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0041	1257	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0042	1257	1	0	1	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0043	1257	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/1	a0044	1257	1	0	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0045	1257	1	0	0	0	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0046	1257	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0047	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0048	352	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0049	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0050	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0051	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0052	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0053	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0054	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0055	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0056	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0057	1257	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0058	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0059	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0060	1257	1	0	1	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0061	1257	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0062	1257	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0063	1257	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0064	1257	1	0	0	0	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0065	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0066	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0067	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0068	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0069	1257	1	0	1	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0070	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0071	1257	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB6_chr2_219204772_219223958	1/0	a0001	842	327	74	68	132	14	38	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0002	842	14	13	1	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958