Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD26_chr10_26999116_27105494	0/0	a0012	1710	2	2	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0013	1710	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0014	1710	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0015	1710	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0016	1710	1	0	0	1	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0017	1710	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0018	1710	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0019	1710	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0020	1710	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0021	1710	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0022	1710	1	0	0	1	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0023	1710	1	0	0	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0024	1710	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0025	1709	1	0	0	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0026	1710	1	0	0	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0027	1710	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	a0028	1710	1	0	0	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD27_chr19_32592006_32680180	1/0	a0001	1050	206	44	29	105	8	19	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	a0002	1050	74	34	3	30	1	6	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/1	a0003	1050	56	9	16	10	5	15	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	a0004	1050	4	0	0	4	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	a0005	1050	3	3	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	a0006	1050	1	0	0	0	0	1	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	a0007	1050	1	0	0	0	0	1	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	a0008	1050	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	a0009	1050	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	a0010	1050	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD28_chr3_15662236_15802979	1/1	a0001	1083	329	91	55	139	10	32	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	a0002	1083	4	0	2	0	0	2	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	a0003	1083	2	1	1	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	a0004	1083	2	0	0	2	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	a0005	1083	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	a0006	1083	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	a0007	1083	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD29_chr18_23593926_23667911	1/1	a0001	301	346	87	56	150	12	39	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	a0002	301	1	1	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	a0003	301	1	0	0	1	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	a0004	301	1	0	1	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	a0005	301	1	0	1	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	a0006	301	1	0	0	1	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	a0007	301	1	0	0	0	0	1	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD2_chr10_97567779_97588884	1/0	a0001	333	236	80	30	104	4	17	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/1	a0002	333	203	16	52	95	12	27	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	a0003	333	1	0	0	1	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	a0004	333	1	0	0	1	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	a0005	333	1	0	0	1	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD30A_chr10_37120598_37237567	0/0	a0000	0	1	1	0	0	0	0	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	1/1	a0001	1397	93	15	14	48	2	12	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	a0002	1397	50	29	8	9	2	2	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	a0003	1397	18	0	6	10	2	0	copy fasta	ANKRD30A	chr10	37120598	37237567