JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LIPE_chr19_42396514_42432388	0/0	a0006	1076	3	3	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0007	1076	1	1	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0008	1076	1	1	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0009	1076	1	1	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0010	1076	1	0	0	1	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0011	1076	1	0	0	0	0	1	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0012	1076	1	0	0	1	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0013	1076	1	0	0	0	1	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0014	1076	1	0	0	1	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPF_chr10_88659442_88683814	1/1	a0001	398	275	65	56	105	16	31	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	a0002	398	99	1	17	67	2	12	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	a0003	398	35	22	2	10	0	1	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	a0004	398	1	0	1	0	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	a0005	398	1	0	0	1	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	a0006	398	1	1	0	0	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	a0007	398	1	1	0	0	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	a0008	398	1	0	0	1	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPG_chr18_49557057_49604185	1/0	a0001	500	282	70	64	104	10	33	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/1	a0002	500	85	10	15	45	3	11	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	a0003	500	8	8	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	a0004	500	5	5	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	a0005	500	1	0	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	a0006	500	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	a0007	500	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	a0008	500	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPH_chr3_185501262_185557588	1/1	a0001	451	348	82	63	149	12	40	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	a0002	451	4	3	1	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	a0003	451	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	a0004	451	1	1	0	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	a0005	458	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	a0006	451	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	a0007	451	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	a0008	451	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPI_chr21_14103813_14215955	1/1	a0001	460	111	17	17	60	3	12	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0002	460	80	15	8	42	5	10	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0003	460	57	2	10	37	1	7	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0004	460	55	24	7	12	5	7	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0005	460	39	22	12	2	0	3	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0006	460	4	0	2	2	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0007	460	3	3	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0008	460	3	1	2	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0009	460	2	1	1	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0010	460	1	0	0	0	0	1	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0011	460	1	1	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0012	460	1	1	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0013	460	1	1	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0014	460	1	1	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0015	460	1	0	0	1	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0016	460	1	0	1	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	a0017	460	1	1	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955