JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LIPJ_chr10_88581762_88611976	0/1	a0001	366	362	71	66	176	12	36	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	1/0	a0002	366	23	1	8	0	6	7	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	a0003	366	9	8	1	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	a0004	366	3	0	0	3	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	a0005	366	3	3	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	a0006	366	3	0	0	3	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	a0007	366	2	2	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	a0008	366	1	1	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	a0009	366	1	1	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	a0010	366	1	1	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	a0011	366	1	0	0	0	0	1	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	a0012	366	1	0	1	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPK_chr10_88701249_88757776	1/1	a0001	399	243	71	41	90	14	25	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	a0002	399	80	1	12	57	2	8	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	a0003	399	17	15	2	0	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	a0004	399	5	0	1	4	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	a0005	399	1	0	0	0	0	1	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	a0006	247	1	1	0	0	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	a0007	399	1	0	0	0	0	1	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	a0008	399	1	0	0	1	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	a0009	399	1	0	0	0	0	1	copy fasta	LIPK	chr10	88701249	88757776
LIPM_chr10_88797730_88825546	1/1	a0001	423	415	78	70	206	17	42	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	a0002	423	20	0	5	14	0	1	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	a0003	423	13	11	2	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	a0004	423	5	5	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	a0005	423	4	0	1	0	1	2	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	a0006	423	1	0	0	1	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	a0007	423	1	0	0	1	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	a0008	423	1	1	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	a0009	423	1	0	0	0	0	1	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	a0010	423	1	1	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPN_chr10_88755020_88784626	1/1	a0001	398	210	45	48	90	6	19	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	a0002	398	169	36	25	77	8	23	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	a0003	398	9	9	0	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	a0004	398	2	1	1	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	a0005	398	2	0	0	0	2	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	a0006	398	1	0	0	1	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	a0007	398	1	1	0	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPT1_chr2_99149967_99168137	1/1	a0001	373	401	88	78	170	16	47	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	a0002	373	2	0	0	2	0	0	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	a0003	373	1	1	0	0	0	0	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	a0004	373	1	0	0	0	0	1	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	a0005	373	1	1	0	0	0	0	copy fasta	LIPT1	chr2	99149967	99168137
LIPT2_chr11_74485519_74498724	0/1	a0001	231	219	37	38	110	10	23	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	1/0	a0002	231	124	54	17	36	2	14	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	a0003	231	74	6	16	43	2	7	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	a0004	231	1	1	0	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	a0005	231	1	0	1	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	a0006	231	1	0	0	1	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LITAFD_chr16_8877351_8890350	0/1	a0001	72	386	78	72	178	14	43	copy fasta	LITAFD	chr16	8877351	8890350