JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LLGL2_chr17_75520697_75580209	0/0	a0012	1020	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0013	1020	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0014	1020	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0015	1020	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0016	1020	1	0	0	0	0	1	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0017	1020	1	0	0	0	0	1	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0018	1020	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0019	1020	1	0	0	0	1	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0020	1020	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0021	1020	1	0	0	0	0	1	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0022	1020	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0023	538	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0024	1020	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0025	1020	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0026	1020	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0027	1020	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0028	1020	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0029	1020	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0030	1020	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0031	1020	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0032	1020	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0033	1020	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLPH_chr12_66111555_66135750	1/1	a0001	129	347	69	56	154	18	48	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	a0002	129	17	17	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LMAN1L_chr15_74807835_74830754	1/1	a0001	526	301	54	48	158	15	24	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	a0002	526	58	4	8	31	3	12	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	a0003	526	19	17	2	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	a0004	526	12	12	0	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	a0005	526	11	1	6	0	0	4	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	a0006	526	3	3	0	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	a0007	526	2	2	0	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	a0008	526	1	1	0	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	a0009	526	1	0	0	1	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1_chr18_59322823_59364265	1/1	a0001	510	312	60	61	155	8	26	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	a0002	510	44	1	11	28	2	2	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	a0003	510	24	16	3	0	3	2	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	a0004	510	3	0	1	0	1	1	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	a0005	114	1	0	0	0	0	1	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	a0006	510	1	1	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	a0007	510	1	0	0	1	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN2L_chr2_96700929_96745064	1/1	a0001	348	266	84	53	95	14	18	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2L_chr2_96700929_96745064	0/0	a0002	348	1	0	0	1	0	0	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2L_chr2_96700929_96745064	0/0	a0003	348	1	0	1	0	0	0	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2_chr5_177326567_177356668	1/1	a0001	356	368	98	70	143	15	40	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	a0002	356	5	0	0	5	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	a0003	356	1	0	0	0	1	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	a0004	356	1	1	0	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	a0005	356	1	1	0	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMBR1L_chr12_49092139_49115847	1/1	a0001	489	370	96	53	175	12	32	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	a0002	489	5	0	0	0	0	5	copy fasta	LMBR1L	chr12	49092139	49115847