JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LMBR1L_chr12_49092139_49115847	0/0	a0003	489	2	0	1	1	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	a0004	489	1	0	0	0	0	1	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	a0005	458	1	0	0	1	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	a0006	489	1	0	0	1	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1_chr7_156672791_156898183	1/0	a0001	490	264	65	49	108	11	30	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/1	a0002	490	49	7	5	33	1	2	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	a0003	490	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBRD1_chr6_69669010_69802010	1/1	a0001	540	224	71	41	85	6	19	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	a0002	540	121	11	29	58	8	15	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	a0003	540	1	0	0	1	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	a0004	540	1	1	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	a0005	540	1	1	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD2_chr5_36093407_36156887	1/1	a0001	695	358	82	60	164	14	36	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	a0002	695	4	4	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMCD1_chr3_8496823_8579668	1/1	a0001	365	304	78	63	110	14	37	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	a0002	365	2	0	1	0	0	1	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	a0003	365	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	a0004	365	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	a0005	365	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	a0006	365	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	a0007	365	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	a0008	365	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	a0009	365	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	a0010	365	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMF1_chr16_848634_975984	1/1	a0001	567	222	45	44	87	11	33	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0002	567	18	2	5	10	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0003	567	15	1	3	5	4	2	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0004	567	5	3	0	0	0	2	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0005	567	5	5	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0006	567	4	4	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0007	567	3	1	2	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0008	567	3	0	1	0	1	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0009	567	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0010	567	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0011	567	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0012	567	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0013	567	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0014	567	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0015	567	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0016	567	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0017	567	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0018	567	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0019	567	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0020	567	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0021	567	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0022	567	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0023	567	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	a0024	567	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF2_chr22_50497949_50512702	1/1	a0001	707	356	77	74	155	15	33	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0002	707	39	11	11	7	3	7	copy fasta	LMF2	chr22	50497949	50512702