JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LMF2_chr22_50497949_50512702	0/0	a0003	707	3	1	0	0	0	2	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0004	707	2	2	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0005	707	2	0	0	2	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0006	707	2	2	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0007	707	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0008	707	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0009	707	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0010	707	1	0	0	0	0	1	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0011	707	1	0	0	0	0	1	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0012	707	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0013	707	1	0	1	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0014	707	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0015	707	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	a0016	707	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMLN_chr3_197955217_198048720	1/1	a0001	684	185	40	34	77	6	26	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	a0002	684	68	43	11	2	2	10	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	a0003	684	4	0	3	1	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	a0004	684	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMNA_chr1_156109711_156142866	1/1	a0001	572	285	86	64	97	6	30	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/0	a0002	572	1	0	0	1	0	0	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156145081	1/1	a0001	664	285	86	60	99	4	34	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	a0002	664	1	0	0	1	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNB1_chr5_126772136_126842020	1/1	a0001	586	373	84	70	166	12	39	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	a0002	586	1	0	0	0	0	1	copy fasta	LMNB1	chr5	126772136	126842020
LMNB2_chr19_2423166_2461959	1/1	a0001	620	338	87	62	129	13	45	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	a0002	620	11	0	0	10	0	1	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	a0003	620	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	a0004	620	1	0	0	0	1	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	a0005	620	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	a0006	620	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	a0007	620	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	a0008	620	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	a0009	620	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNTD1_chr12_25471082_25558283	0/1	a0001	409	289	42	55	156	8	27	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	1/0	a0002	409	87	36	18	13	4	15	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	a0003	409	4	4	0	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	a0004	409	3	0	2	0	0	1	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	a0005	409	1	0	0	1	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	a0006	409	1	0	0	0	0	1	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	a0007	409	1	1	0	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	a0008	409	1	1	0	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	a0009	409	1	0	1	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD2_chr11_549850_565738	0/1	a0001	634	255	50	53	111	9	31	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0002	634	76	31	15	19	2	9	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0003	634	23	0	7	10	4	2	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0004	634	7	7	0	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0005	634	5	5	0	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0006	634	4	1	3	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0007	634	3	2	1	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0008	634	3	0	0	3	0	0	copy fasta	LMNTD2	chr11	549850	565738