JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LMNTD2_chr11_549850_565738	0/0	a0009	634	2	1	1	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0010	634	1	0	0	0	1	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0011	84	1	0	0	1	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0012	634	1	0	0	1	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0013	634	1	0	0	1	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0014	634	1	0	1	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0015	634	1	0	0	1	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0016	634	1	0	0	1	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0017	634	1	0	1	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	a0018	634	1	1	0	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMO1_chr11_8219309_8268878	1/1	a0001	156	423	98	78	185	12	48	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	a0002	156	1	0	0	1	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO2_chr11_33853576_33897076	1/1	a0001	227	440	98	78	200	14	48	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	a0002	227	1	0	0	1	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	a0003	227	1	0	0	1	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO3_chr12_16543372_16611162	1/1	a0001	145	354	82	60	166	12	32	copy fasta	LMO3	chr12	16543372	16611162
LMO4_chr1_87323880_87353923	1/1	a0001	165	390	96	78	159	9	46	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	a0002	165	1	0	0	0	1	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	a0003	165	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO7_chr13_75631330_75864866	1/1	a0001	1631	76	13	15	39	2	5	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0002	1631	44	5	15	9	4	11	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0003	1631	43	0	11	29	1	2	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0004	1631	25	4	4	10	2	5	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0005	1631	15	0	0	12	0	3	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0006	1631	14	10	3	0	1	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0007	1631	10	6	1	1	0	2	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0008	1631	10	4	1	2	0	3	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0009	1631	7	6	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0010	1631	5	4	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0011	1631	4	0	0	4	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0012	1631	4	2	2	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0013	1631	3	3	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0014	1631	3	0	3	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0015	1631	1	1	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0016	1631	1	0	0	1	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0017	1631	1	0	0	1	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0018	1631	1	0	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0019	1631	1	0	0	0	0	1	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0020	1631	1	0	0	0	0	1	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0021	1631	1	0	0	1	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0022	1631	1	0	0	0	0	1	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	a0023	1631	1	0	0	1	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMOD1_chr1_201891456_201951548	1/1	a0001	600	325	67	60	149	12	35	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	a0002	600	70	22	17	16	4	11	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	a0003	600	3	2	1	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	a0004	600	1	1	0	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	a0005	600	1	0	0	1	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD2_chr7_123650866_123669290	1/1	a0001	547	394	92	65	176	16	43	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	a0002	547	1	0	0	0	0	1	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	a0003	547	1	0	1	0	0	0	copy fasta	LMOD2	chr7	123650866	123669290