JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LMOD3_chr3_69101065_69127595	0/0	a0000	0	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	1/0	a0001	560	390	76	55	203	14	41	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0002	560	8	8	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/1	a0003	560	4	0	2	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0004	560	4	4	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0005	560	4	0	4	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0006	560	4	4	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0007	560	3	0	2	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0008	560	3	3	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0009	560	2	2	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0010	560	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0011	560	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0012	560	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0013	560	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	a0014	560	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMTK2_chr7_98101862_98214638	1/0	a0001	1503	211	67	29	81	4	29	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0002	1503	69	1	11	54	0	3	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/1	a0003	1503	50	5	20	17	3	4	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0004	1503	41	13	5	19	0	4	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0005	1503	3	0	0	3	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0006	1503	2	2	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0007	1503	2	0	0	0	0	2	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0008	1503	1	0	1	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0009	1503	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0010	1503	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0011	1503	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0012	1503	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0013	1503	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0014	1503	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0015	1503	1	0	0	0	1	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0016	1503	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0017	1503	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0018	1503	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	a0019	1503	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK3_chr19_48480271_48516835	0/1	a0000	0	182	49	35	75	6	16	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	1/0	a0001	1460	74	19	17	29	3	5	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	a0002	857	31	10	2	8	1	10	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	a0003	471	10	0	3	6	1	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	a0004	1460	7	4	3	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	a0005	1460	3	2	1	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	a0006	1460	3	0	0	3	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	a0007	1460	1	0	0	0	1	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	a0008	1460	1	0	1	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	a0009	1460	1	0	0	1	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	a0010	471	1	0	0	0	0	1	copy fasta	LMTK3	chr19	48480271	48516835
LMX1A_chr1_165196867_165361715	1/1	a0001	382	287	84	58	99	8	36	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	a0002	382	1	0	0	1	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1B_chr9_126608928_126706032	1/1	a0001	402	342	84	62	146	10	38	copy fasta	LMX1B	chr9	126608928	126706032
LNP1_chr3_100396539_100461319	0/1	a0001	197	207	45	24	113	6	18	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	1/0	a0002	178	191	45	48	67	6	24	copy fasta	LNP1	chr3	100396539	100461319