JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LOC122526780_chr17_6631780_6645316	0/0	a0012	1178	2	0	0	2	0	0	copy fasta	LOC122526780	chr17	6631780	6645316
LOC122526780_chr17_6631780_6645316	0/0	a0013	1178	1	1	0	0	0	0	copy fasta	LOC122526780	chr17	6631780	6645316
LOC122526780_chr17_6631780_6645316	0/0	a0014	1178	1	0	0	0	0	1	copy fasta	LOC122526780	chr17	6631780	6645316
LOC122526780_chr17_6631780_6645316	0/0	a0015	1178	1	1	0	0	0	0	copy fasta	LOC122526780	chr17	6631780	6645316
LOC122526780_chr17_6631780_6645316	0/0	a0016	574	1	1	0	0	0	0	copy fasta	LOC122526780	chr17	6631780	6645316
LOC122526780_chr17_6631780_6645316	0/0	a0017	1178	1	0	1	0	0	0	copy fasta	LOC122526780	chr17	6631780	6645316
LOC122526780_chr17_6631780_6645316	0/0	a0018	1178	1	1	0	0	0	0	copy fasta	LOC122526780	chr17	6631780	6645316
LOC122526780_chr17_6631780_6645316	0/0	a0019	1178	1	1	0	0	0	0	copy fasta	LOC122526780	chr17	6631780	6645316
LOC122526780_chr17_6631780_6645316	0/0	a0020	1178	1	0	0	1	0	0	copy fasta	LOC122526780	chr17	6631780	6645316
LOC122539214_chr19_52645447_52695496	0/0	a0001	641	192	55	36	89	3	9	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0002	641	91	1	12	67	2	9	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	1/0	a0003	641	83	5	10	40	2	25	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0004	641	32	14	7	2	4	5	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/1	a0005	641	27	4	12	6	3	1	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0006	641	7	6	1	0	0	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0007	641	7	7	0	0	0	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0008	641	2	1	0	0	0	1	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0009	641	2	1	0	0	1	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0010	641	2	2	0	0	0	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0011	641	1	0	0	1	0	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0012	641	1	0	1	0	0	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0013	641	1	0	0	1	0	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0014	641	1	1	0	0	0	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0015	641	1	0	1	0	0	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0016	641	1	0	0	0	1	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC122539214_chr19_52645447_52695496	0/0	a0017	641	1	1	0	0	0	0	copy fasta	LOC122539214	chr19	52645447	52695496
LOC127898562_chr13_77321905_77331988	1/1	a0001	27	422	94	74	194	16	42	copy fasta	LOC127898562	chr13	77321905	77331988
LOC127898563_chr6_68630890_68640967	0/0	a0000	0	1	0	0	1	0	0	copy fasta	LOC127898563	chr6	68630890	68640967
LOC127898563_chr6_68630890_68640967	0/0	a0001	25	397	96	74	165	16	46	copy fasta	LOC127898563	chr6	68630890	68640967
LOC127903862_chr6_16323342_16333431	1/1	a0001	29	430	96	76	196	16	44	copy fasta	LOC127903862	chr6	16323342	16333431
LOC127933115_chrX_23778278_23788367	1/1	a0001	29	334	78	59	150	13	32	copy fasta	LOC127933115	chrX	23778278	23788367
LOC128031832_chr1_31914563_31924628	0/0	a0001	21	402	96	76	162	18	50	copy fasta	LOC128031832	chr1	31914563	31924628
LOC128031833_chrX_63749485_63759664	1/1	a0001	59	225	58	43	91	7	24	copy fasta	LOC128031833	chrX	63749485	63759664
LOC128031834_chr3_88053139_88063216	0/0	a0001	25	356	90	74	152	12	28	copy fasta	LOC128031834	chr3	88053139	88063216
LOC128031835_chr6_53060602_53070673	0/0	a0001	23	380	88	66	182	12	32	copy fasta	LOC128031835	chr6	53060602	53070673
LOC128031836_chr1_203797094_203807192	1/1	a0001	32	398	92	70	180	14	40	copy fasta	LOC128031836	chr1	203797094	203807192
LOC128031837_chr7_112445487_112455645	1/1	a0001	52	449	94	85	204	18	46	copy fasta	LOC128031837	chr7	112445487	112455645
LOC128031837_chr7_112445487_112455645	0/0	a0002	52	1	0	1	0	0	0	copy fasta	LOC128031837	chr7	112445487	112455645
LOC128071544_chr1_147606590_147616796	1/1	a0001	68	456	94	80	218	18	44	copy fasta	LOC128071544	chr1	147606590	147616796
LOC128071545_chr15_80997142_81007279	1/1	a0001	45	362	98	68	142	12	40	copy fasta	LOC128071545	chr15	80997142	81007279
LOC128071547_chr12_120529697_120539957	1/1	a0001	86	407	92	76	175	18	44	copy fasta	LOC128071547	chr12	120529697	120539957
LOC128071547_chr12_120529697_120539957	0/0	a0002	69	1	0	0	1	0	0	copy fasta	LOC128071547	chr12	120529697	120539957
LOC128092246_chr6_53036266_53046385	1/1	a0001	39	378	94	66	166	12	38	copy fasta	LOC128092246	chr6	53036266	53046385
LOC128092247_chr7_151056928_151066978	0/0	a0001	16	416	96	70	186	18	46	copy fasta	LOC128092247	chr7	151056928	151066978
LOC128092248_chr9_130708626_130718724	1/1	a0001	32	396	75	74	183	14	48	copy fasta	LOC128092248	chr9	130708626	130718724
LOC128092248_chr9_130708626_130718724	0/0	a0002	32	28	15	2	11	0	0	copy fasta	LOC128092248	chr9	130708626	130718724
LOC128092249_chr21_46321288_46331491	1/1	a0001	67	418	98	76	182	18	42	copy fasta	LOC128092249	chr21	46321288	46331491
LOC128092249_chr21_46321288_46331491	0/0	a0002	67	2	0	0	0	0	2	copy fasta	LOC128092249	chr21	46321288	46331491
LOC128092250_chr8_32642202_32652390	1/1	a0001	62	430	98	80	190	18	42	copy fasta	LOC128092250	chr8	32642202	32652390
LOC128092251_chr1_89574592_89584654	0/0	a0001	20	406	94	70	184	14	44	copy fasta	LOC128092251	chr1	89574592	89584654