JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LOC128092252_chr15_50643802_50691717	1/1	a0001	129	388	96	70	166	12	42	copy fasta	LOC128092252	chr15	50643802	50691717
LOC128125814_chr12_57512712_57525480	1/1	a0001	34	322	92	68	114	12	34	copy fasta	LOC128125814	chr12	57512712	57525480
LOC128125814_chr12_57512712_57525480	0/0	a0002	34	4	0	0	4	0	0	copy fasta	LOC128125814	chr12	57512712	57525480
LOC128125816_chr12_122221430_122231564	1/1	a0001	44	372	84	76	156	12	42	copy fasta	LOC128125816	chr12	122221430	122231564
LOC128125818_chr4_6059977_6075162	1/1	a0001	45	462	100	72	220	18	50	copy fasta	LOC128125818	chr4	6059977	6075162
LOC128462377_chr16_89312046_89423292	0/0	a0001	12	366	92	70	148	18	38	copy fasta	LOC128462377	chr16	89312046	89423292
LOC128706665_chr20_10408708_10439222	1/1	a0001	63	400	85	70	187	14	42	copy fasta	LOC128706665	chr20	10408708	10439222
LOC128706665_chr20_10408708_10439222	0/0	a0002	63	5	0	0	5	0	0	copy fasta	LOC128706665	chr20	10408708	10439222
LOC128706665_chr20_10408708_10439222	0/0	a0003	63	2	2	0	0	0	0	copy fasta	LOC128706665	chr20	10408708	10439222
LOC128706665_chr20_10408708_10439222	0/0	a0004	63	1	1	0	0	0	0	copy fasta	LOC128706665	chr20	10408708	10439222
LOC128706666_chr20_10408708_10439222	1/1	a0001	50	405	87	69	191	14	42	copy fasta	LOC128706666	chr20	10408708	10439222
LOC128706666_chr20_10408708_10439222	0/0	a0002	50	2	1	1	0	0	0	copy fasta	LOC128706666	chr20	10408708	10439222
LOC128706666_chr20_10408708_10439222	0/0	a0003	50	1	0	0	1	0	0	copy fasta	LOC128706666	chr20	10408708	10439222
LOC128854680_chr10_75100669_75114157	1/0	a0001	188	197	46	34	80	6	30	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/1	a0002	188	192	47	39	91	5	9	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	a0003	188	5	0	1	0	3	1	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	a0004	188	3	2	1	0	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	a0005	188	1	0	0	1	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	a0006	188	1	0	0	1	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	a0007	168	1	1	0	0	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	a0008	188	1	0	0	1	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	a0009	188	1	0	1	0	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC400499_chr16_11367015_11532247	0/0	a0001	3320	5	0	0	5	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	1/0	a0002	3320	5	0	0	3	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0003	3320	5	0	0	5	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0004	3320	4	0	0	4	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0005	3320	4	0	0	4	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0006	3320	4	0	3	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0007	3320	3	0	0	3	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0008	3320	3	0	2	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/1	a0009	3320	3	0	1	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0010	3320	3	0	1	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0011	3320	2	2	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0012	3320	2	0	2	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0013	3320	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0014	3320	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0015	3320	2	0	2	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0016	3320	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0017	3320	2	0	1	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0018	3320	2	0	0	0	2	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0019	3320	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0020	3320	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0021	3320	2	0	2	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0022	3320	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0023	3320	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0024	3320	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0025	3320	2	0	2	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0026	3320	2	2	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0027	3320	2	0	2	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	a0028	3320	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247