JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LOC729966_chr19_18245034_18260362	0/0	a0006	234	5	4	1	0	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	a0007	234	4	4	0	0	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	a0008	234	2	1	1	0	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	a0009	234	2	2	0	0	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	a0010	234	2	0	0	0	0	2	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	a0011	234	1	0	0	0	0	1	copy fasta	LOC729966	chr19	18245034	18260362
LOC730098_chr9_34659163_34671045	1/1	a0001	87	378	92	80	146	14	44	copy fasta	LOC730098	chr9	34659163	34671045
LOC93622_chr4_6669075_6681047	1/1	a0001	119	444	95	81	205	18	43	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	a0002	119	16	1	0	13	0	2	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	a0003	107	1	0	1	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	a0004	119	1	0	0	0	0	1	copy fasta	LOC93622	chr4	6669075	6681047
LONP1_chr19_5686834_5725146	1/1	a0001	959	350	80	69	142	14	43	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0002	959	6	1	3	1	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0003	959	5	0	1	4	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0004	959	3	0	0	3	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0005	959	2	1	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0006	959	2	0	1	0	1	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0007	959	2	1	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0008	959	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0009	959	1	0	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0010	959	1	0	0	0	1	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0011	959	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0012	959	1	1	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0013	959	1	0	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0014	959	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0015	959	1	1	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0016	959	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0017	959	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0018	959	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0019	959	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0020	959	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0021	959	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0022	959	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	a0023	959	1	1	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP2_chr16_48239300_48362349	1/1	a0001	852	152	77	34	18	5	16	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	a0002	852	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	a0003	852	1	0	0	0	1	0	copy fasta	LONP2	chr16	48239300	48362349
LONRF1_chr8_12716906_12760526	1/0	a0001	773	386	92	62	177	12	42	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	a0002	773	7	0	0	7	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/1	a0003	773	7	1	5	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	a0004	773	1	1	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	a0005	773	1	0	0	1	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	a0006	773	1	0	1	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	a0007	773	1	0	0	1	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF2_chr2_100266875_100327501	0/1	a0001	754	142	10	23	93	5	10	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	a0002	754	138	67	25	29	3	14	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	1/0	a0003	754	57	9	17	10	4	16	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	a0004	754	15	0	1	14	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	a0005	754	4	0	0	4	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	a0006	754	3	3	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501