JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LONRF2_chr2_100266875_100327501	0/0	a0007	754	2	1	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	a0008	754	2	0	0	1	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	a0009	754	1	0	0	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	a0010	754	1	0	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	a0011	754	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	a0012	754	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	a0013	754	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF3_chrX_118969618_119023355	1/1	a0001	759	301	70	49	137	11	32	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	a0002	759	4	4	0	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	a0003	759	1	0	1	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	a0004	671	1	0	0	1	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	a0005	734	1	0	0	1	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	a0006	463	1	0	0	1	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LORICRIN_chr1_153254687_153267124	1/0	a0001	312	169	30	14	99	7	18	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/1	a0002	316	126	20	20	67	2	16	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0003	316	63	10	25	11	5	12	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0004	318	47	28	7	8	2	2	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0005	316	6	0	0	6	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0006	316	2	2	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0007	316	1	0	1	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0008	286	1	0	1	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0009	320	1	1	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0010	318	1	1	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0011	316	1	0	0	1	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0012	316	1	0	0	0	0	1	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0013	312	1	0	0	0	0	1	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0014	316	1	1	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	a0015	318	1	1	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LOXHD1_chr18_46472273_46662220	0/0	a0001	2273	74	10	12	42	3	7	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	1/1	a0002	2273	48	12	11	14	1	8	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0003	2273	45	17	10	6	5	7	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0004	2273	11	2	3	6	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0005	2273	10	3	0	6	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0006	2273	5	5	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0007	2272	5	0	0	5	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0008	2273	4	3	1	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0009	2273	4	0	0	0	0	4	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0010	2273	4	0	0	4	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0011	2273	3	2	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0012	2273	3	3	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0013	2273	3	0	3	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0014	2273	3	0	0	3	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0015	2273	2	0	2	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0016	2272	2	0	0	0	1	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0017	2273	2	0	0	0	0	2	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0018	2273	2	2	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0019	2272	2	0	0	0	2	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0020	2272	2	0	0	0	0	2	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0021	2273	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0022	2273	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220