JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LOXHD1_chr18_46472273_46662220	0/0	a0023	2273	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0024	2273	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0025	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0026	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0027	2273	1	0	0	0	1	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0028	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0029	2273	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0030	2273	1	0	1	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0031	2273	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0032	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0033	2273	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0034	2273	1	0	1	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0035	2273	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0036	2273	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0037	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0038	2273	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0039	2273	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0040	2273	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0041	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0042	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0043	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0044	2273	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0045	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0046	2272	1	0	1	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0047	2272	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0048	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0049	2273	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0050	2273	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0051	2272	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0052	2273	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0053	2272	1	0	1	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0054	2272	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0055	2272	1	0	0	0	1	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	a0056	2272	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXL1_chr15_73921462_73957136	1/0	a0001	574	171	22	42	72	9	25	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/1	a0002	574	153	14	20	96	4	18	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	a0003	574	99	44	19	28	1	7	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	a0004	574	18	17	1	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	a0005	574	2	0	0	2	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	a0006	574	1	0	0	1	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	a0007	574	1	1	0	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	a0008	574	1	0	0	1	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	a0009	574	1	1	0	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	a0010	574	1	1	0	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL2_chr8_23291897_23409120	0/1	a0001	774	231	57	46	87	9	31	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	1/0	a0002	774	106	33	21	42	1	8	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	a0003	774	6	0	4	2	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	a0004	774	1	0	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	a0005	774	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	a0006	774	1	0	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120