JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LOXL2_chr8_23291897_23409120	0/0	a0007	774	1	0	0	0	0	1	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	a0008	774	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL3_chr2_74527258_74558942	1/1	a0001	753	245	77	47	99	3	17	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	a0002	753	65	4	8	48	0	5	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	a0003	753	7	7	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	a0004	753	5	5	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	a0005	753	4	0	4	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	a0006	753	2	0	1	0	1	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	a0007	753	1	1	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	a0008	753	1	1	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	a0009	753	1	1	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	a0010	753	1	0	0	1	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL4_chr10_98242690_98273194	1/1	a0001	756	209	78	32	70	10	17	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0002	756	154	8	31	92	5	18	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0003	756	42	0	6	28	3	5	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0004	756	6	0	1	5	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0005	451	4	0	0	4	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0006	451	3	2	0	1	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0007	756	3	0	0	3	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0008	756	2	0	0	2	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0009	756	2	2	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0010	756	2	0	2	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0011	756	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0012	756	1	1	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0013	756	1	1	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0014	756	1	0	0	1	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0015	756	1	0	0	1	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0016	756	1	0	0	1	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0017	451	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0018	756	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0019	756	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0020	756	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	a0021	613	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOX_chr5_122058195_122083259	1/1	a0001	417	256	85	49	83	11	26	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	a0002	417	67	12	13	35	1	6	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	a0003	417	1	1	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LPAR1_chr9_110868263_111043470	1/1	a0001	364	298	89	58	103	12	34	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	a0002	364	2	0	0	2	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	a0003	364	1	0	0	1	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	a0004	364	1	1	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR2_chr19_19618655_19633220	1/1	a0001	348	417	94	82	177	16	46	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	a0002	348	1	0	0	1	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR3_chr1_84806602_84898206	1/1	a0001	353	374	81	78	163	16	34	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	a0002	353	3	3	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	a0003	353	2	0	0	2	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	a0004	353	2	2	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	a0005	353	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR4_chrX_78742720_78763714	1/1	a0001	370	321	73	61	140	13	32	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	a0002	370	2	2	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	a0003	370	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714