JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LPCAT1_chr5_1456427_1528960	0/0	a0006	534	1	0	0	0	0	1	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	a0007	534	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT2_chr16_55504072_55591666	0/1	a0001	544	157	27	35	63	6	25	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	1/0	a0002	544	134	50	16	55	6	6	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	a0003	544	11	0	0	8	0	3	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	a0004	544	4	4	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	a0005	544	4	0	2	0	0	2	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	a0006	544	2	2	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	a0007	544	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	a0008	544	1	0	1	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT3_chr12_6971185_7023476	1/0	a0001	487	185	34	36	90	7	17	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	a0002	487	78	51	7	17	1	2	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/1	a0003	487	9	2	1	2	0	3	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	a0004	487	6	0	0	4	0	2	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	a0005	487	2	0	0	2	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	a0006	487	1	1	0	0	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	a0007	487	1	0	0	1	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT4_chr15_34353633_34372196	1/1	a0001	524	445	94	76	207	18	48	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	a0002	524	1	1	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	a0003	524	1	0	0	1	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	a0004	524	1	1	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	a0005	524	1	1	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	a0006	524	1	1	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPGAT1_chr1_211738457_211835763	1/1	a0001	370	331	77	70	126	14	42	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	a0002	370	1	1	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPIN1_chr2_11741632_11832409	1/1	a0001	926	268	81	51	91	13	30	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	a0002	925	6	5	1	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	a0003	926	3	0	2	0	1	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	a0004	926	1	0	0	1	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN2_chr18_2911999_3018144	1/1	a0001	896	370	85	69	164	10	40	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	a0002	896	3	3	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	a0003	896	1	0	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	a0004	896	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	a0005	896	1	0	0	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	a0006	896	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	a0007	896	1	0	0	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	a0008	896	1	0	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	a0009	896	1	0	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN3_chr20_41335821_41365582	1/1	a0001	851	191	38	30	83	10	28	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0002	851	169	31	24	103	6	5	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0003	851	10	5	3	0	0	2	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0004	851	7	0	0	7	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0005	851	6	4	2	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0006	851	5	5	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0007	851	4	0	0	4	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0008	851	2	0	0	0	2	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0009	851	2	0	0	2	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0010	851	1	0	0	0	0	1	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0011	531	1	0	1	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0012	851	1	0	1	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582