JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LPIN3_chr20_41335821_41365582	0/0	a0013	851	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0014	851	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0015	851	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0016	851	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	a0017	851	1	0	1	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPL_chr8_19934253_19972259	1/1	a0001	476	331	79	69	129	15	37	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	a0002	473	33	4	2	22	1	4	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	a0003	476	6	4	2	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	a0004	476	4	4	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	a0005	476	4	0	3	0	0	1	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	a0006	476	2	2	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	a0007	476	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	a0008	476	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	a0009	473	1	0	0	1	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	a0010	476	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPO_chr17_58233584_58273518	1/1	a0001	712	262	66	49	114	11	20	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	a0002	712	48	16	6	21	1	4	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	a0003	712	11	11	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	a0004	712	2	0	0	2	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	a0005	712	2	0	0	2	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	a0006	712	1	0	1	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	a0007	712	1	1	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	a0008	712	1	0	0	1	0	0	copy fasta	LPO	chr17	58233584	58273518
LPP_chr3_188149157_188895671	1/1	a0001	612	39	5	12	6	2	12	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	a0002	612	27	22	5	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	a0003	612	4	4	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	a0004	612	3	2	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	a0005	612	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	a0006	612	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	a0007	612	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPXN_chr11_58521871_58580856	1/1	a0001	386	309	73	57	139	10	28	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	a0002	386	11	9	2	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	a0003	386	5	4	1	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	a0004	386	1	0	0	1	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	a0005	386	1	1	0	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	a0006	386	1	1	0	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LRATD1_chr2_14627717_14645041	1/1	a0001	292	411	98	74	176	16	45	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	a0002	292	1	0	0	0	0	1	copy fasta	LRATD1	chr2	14627717	14645041
LRATD2_chr8_126547443_126563478	1/1	a0001	310	420	81	74	212	16	35	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	a0002	310	11	11	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	a0003	310	2	2	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	a0004	310	1	0	0	0	0	1	copy fasta	LRATD2	chr8	126547443	126563478
LRAT_chr4_154739000_154758120	1/1	a0001	230	394	91	74	167	14	46	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	a0002	230	3	3	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	a0003	230	1	0	0	1	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRBA_chr4_150259435_151020284	1/0	a0001	2852	114	47	7	49	4	6	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0002	2852	24	11	4	7	0	2	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0003	2852	12	0	3	9	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0004	2852	4	0	0	4	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/1	a0005	2852	3	0	2	0	0	0	copy fasta	LRBA	chr4	150259435	151020284