JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRBA_chr4_150259435_151020284	0/0	a0006	2852	3	3	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0007	2852	2	0	0	2	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0008	2852	2	2	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0009	2852	2	2	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0010	2852	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0011	2852	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0012	2852	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0013	2852	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0014	2852	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0015	2852	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0016	2852	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0017	2852	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0018	2852	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0019	2852	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0020	2852	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0021	2852	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0022	2852	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	a0023	2852	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRCH1_chr13_46548170_46749898	0/1	a0001	763	263	76	47	101	10	28	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	a0002	763	6	6	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	a0003	763	2	0	2	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	a0004	763	1	0	0	1	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	1/0	a0005	763	1	0	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	a0006	763	1	0	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH2_chrX_115105616_115239096	1/1	a0001	765	233	72	39	85	5	30	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	a0002	765	2	0	2	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	a0003	765	1	0	0	1	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	a0004	559	1	0	0	1	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	a0005	138	1	0	1	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH3_chr3_197786254_197893436	1/1	a0001	777	250	65	59	78	11	35	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	a0002	777	32	6	4	16	1	5	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	a0003	777	2	0	0	2	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	a0004	777	2	1	1	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	a0005	777	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	a0006	776	1	1	0	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	a0007	777	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	a0008	777	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	a0009	777	1	1	0	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	a0010	777	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH4_chr7_100569011_100591129	1/1	a0001	683	344	90	47	146	16	43	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	a0002	683	14	0	10	0	1	3	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	a0003	683	4	4	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	a0004	683	2	0	0	1	0	1	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	a0005	683	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	a0006	683	1	0	0	0	0	1	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	a0007	683	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	a0008	683	1	0	1	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	a0009	683	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	a0010	683	1	0	0	0	1	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCOL1_chr12_132598151_132615582	0/0	a0001	159	206	45	41	86	10	24	copy fasta	LRCOL1	chr12	132598151	132615582