JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRCOL1_chr12_132598151_132615582	1/1	a0002	159	97	15	19	38	3	20	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	a0003	159	86	36	15	30	3	2	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	a0004	74	1	0	1	0	0	0	copy fasta	LRCOL1	chr12	132598151	132615582
LRFN1_chr19_39301566_39325863	1/1	a0001	771	276	84	50	101	13	26	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	a0002	771	1	0	0	0	1	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	a0003	771	1	0	0	1	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN2_chr6_40386591_40592364	1/1	a0001	789	210	63	33	83	11	18	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	a0002	789	14	9	3	0	1	1	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	a0003	789	2	0	0	2	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	a0004	789	1	0	0	0	0	1	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	a0005	789	1	0	0	1	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN3_chr19_35931374_35951624	1/1	a0001	628	378	63	75	184	16	38	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0002	628	25	19	3	0	2	1	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0003	628	6	0	0	6	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0004	628	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0005	628	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0006	628	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0007	628	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0008	628	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0009	628	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0010	628	1	0	0	0	0	1	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0011	628	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	a0012	628	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN4_chr11_66852064_66865475	1/0	a0001	635	328	84	47	155	10	31	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/1	a0002	635	48	1	17	22	4	3	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	a0003	635	2	2	0	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	a0004	635	2	0	0	2	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	a0005	635	1	0	0	1	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	a0006	635	1	0	0	0	0	1	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	a0007	635	1	0	0	1	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	a0008	635	1	0	0	1	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	a0009	635	1	0	0	0	0	1	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	a0010	635	1	0	1	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	a0011	635	1	0	1	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	a0012	635	1	1	0	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN5_chr14_41601876_41909549	1/1	a0001	719	279	86	62	98	6	25	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	a0002	719	1	0	0	0	0	1	copy fasta	LRFN5	chr14	41601876	41909549
LRG1_chr19_4531402_4545036	1/0	a0001	347	234	51	49	88	11	34	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/1	a0002	347	145	7	34	82	5	16	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	a0003	347	30	30	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	a0004	347	5	5	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	a0005	347	2	2	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	a0006	347	2	1	1	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	a0007	347	1	0	0	1	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	a0008	347	1	0	0	1	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRGUK_chr7_134122340_134269595	1/1	a0001	825	135	42	16	47	5	23	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0002	825	37	0	7	26	0	4	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0003	825	15	0	9	6	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0004	825	13	6	4	3	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0005	825	5	0	0	5	0	0	copy fasta	LRGUK	chr7	134122340	134269595