JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRGUK_chr7_134122340_134269595	0/0	a0006	825	2	0	2	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0007	825	2	0	0	2	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0008	825	2	0	1	0	1	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0009	825	1	1	0	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0010	825	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0011	825	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0012	825	1	0	0	0	0	1	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0013	825	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0014	825	1	0	1	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0015	825	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0016	825	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	a0017	825	1	1	0	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRIF1_chr1_110942190_110968922	1/0	a0001	769	389	76	62	205	10	35	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/1	a0002	769	51	15	6	12	4	13	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	a0003	769	2	1	1	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	a0004	769	1	0	0	1	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	a0005	769	1	0	0	1	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	a0006	769	1	0	0	1	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	a0007	769	1	0	1	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIG1_chr3_66373797_66506022	0/1	a0001	1093	60	6	25	16	4	8	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0002	1093	58	3	13	38	0	4	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	1/0	a0003	1093	29	16	1	11	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0004	1093	19	4	1	4	1	9	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0005	1093	15	9	4	2	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0006	1093	12	11	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0007	1093	12	5	0	5	0	2	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0008	1093	12	12	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0009	1093	9	3	1	4	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0010	1093	6	1	1	2	1	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0011	1093	4	4	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0012	1093	3	0	0	3	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0013	1093	2	1	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0014	1093	2	0	0	1	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0015	1093	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0016	1093	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0017	1093	1	0	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0018	1093	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0019	1093	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0020	1093	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0021	1093	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0022	1093	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0023	1093	1	0	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0024	1093	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0025	1093	1	0	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0026	1093	1	0	0	0	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0027	1093	1	0	0	0	1	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0028	1093	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0029	1093	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0030	1093	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0031	1093	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022