JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRIG1_chr3_66373797_66506022	0/0	a0032	1093	1	0	0	0	1	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0033	1093	1	0	0	0	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0034	1093	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	a0035	1093	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG2_chr1_113068198_113137260	1/1	a0001	1065	250	77	52	83	12	24	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	a0002	1065	6	6	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	a0003	1065	6	0	2	4	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	a0004	1065	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	a0005	1065	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	a0006	1065	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	a0007	1065	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	a0008	1065	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	a0009	1065	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG3_chr12_58867155_58925504	1/1	a0001	1119	257	69	38	115	10	23	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0002	1118	5	5	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0003	1119	3	0	0	3	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0004	1119	2	0	0	1	0	1	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0005	1119	2	2	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0006	1119	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0007	1119	1	0	1	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0008	1119	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0009	1119	1	0	0	1	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0010	1119	1	0	1	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0011	1123	1	0	0	1	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0012	1119	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0013	1119	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	a0014	1119	1	0	0	1	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIT1_chr10_84226520_84246546	1/1	a0001	623	279	39	63	133	11	31	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0002	623	62	44	4	10	0	4	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0003	623	32	3	3	24	1	1	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0004	623	22	0	3	12	2	5	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0005	623	8	7	1	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0006	623	4	0	0	4	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0007	623	3	0	0	3	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0008	623	2	2	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0009	623	1	0	0	1	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0010	623	1	1	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0011	623	1	1	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0012	623	1	0	1	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0013	623	1	0	0	1	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0014	623	1	0	0	0	0	1	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0015	623	1	1	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	a0016	623	1	0	1	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT2_chr10_84215571_84230544	1/1	a0001	550	199	21	37	101	10	28	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0002	550	91	52	17	11	4	7	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0003	550	46	2	15	25	2	2	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0004	550	33	1	4	22	1	5	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0005	550	20	0	2	18	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0006	550	15	14	1	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0007	550	3	0	0	0	0	3	copy fasta	LRIT2	chr10	84215571	84230544