Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD31_chr5_75063297_75241878	0/0	a0006	1929	12	8	1	3	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0007	1929	11	1	0	8	0	2	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0008	1929	11	9	2	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0009	1929	7	0	0	7	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0010	1929	4	4	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0011	1929	4	1	1	0	1	1	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/1	a0012	1930	3	0	2	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0013	1929	3	0	0	3	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0014	1929	2	2	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0015	1929	2	2	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0016	1930	2	0	0	2	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0017	1929	2	2	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0018	1929	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0019	1930	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0020	1930	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0021	1930	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0022	1929	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0023	1929	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0024	1929	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0025	1929	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0026	1929	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0027	1929	1	0	1	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0028	1929	1	0	1	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0029	1929	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	a0030	1929	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD33B_chr5_10559070_10662816	1/1	a0001	494	297	65	64	114	12	40	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	a0002	494	8	6	2	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	a0003	494	5	5	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	a0004	494	5	5	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	a0005	494	3	3	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	a0006	494	2	2	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	a0007	494	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	a0008	494	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	a0009	494	1	0	0	1	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	a0010	494	1	0	0	1	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33_chr12_51883103_51896727	1/0	a0001	452	256	80	45	95	13	22	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0002	452	66	1	8	49	0	8	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0003	452	64	11	8	32	1	12	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0004	452	45	1	12	29	0	3	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0005	452	6	2	1	3	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0006	454	4	0	4	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0007	452	2	0	0	0	1	1	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0008	452	1	1	0	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0009	452	1	0	1	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0010	448	1	0	0	0	1	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0011	452	1	0	1	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0012	452	1	1	0	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/1	a0013	452	1	0	0	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	a0014	452	1	1	0	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD34A_chr1_145954441_145969575	1/1	a0001	496	390	90	76	170	10	42	copy fasta	ANKRD34A	chr1	145954441	145969575