JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRIT2_chr10_84215571_84230544	0/0	a0008	550	2	0	2	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0009	550	2	1	1	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0010	550	1	1	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0011	550	1	0	0	0	1	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0012	550	1	0	1	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0013	550	1	1	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0014	550	1	0	0	0	0	1	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0015	550	1	1	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	a0016	550	1	0	0	1	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT3_chr4_109843107_109877315	0/1	a0001	679	124	34	22	49	3	15	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	a0002	679	98	24	14	49	3	8	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	1/0	a0003	679	73	22	17	24	1	8	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	a0004	679	24	0	0	22	0	2	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	a0005	679	3	3	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	a0006	679	3	0	0	0	3	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	a0007	679	2	1	1	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	a0008	679	1	0	0	0	0	1	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	a0009	679	1	1	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	a0010	679	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	a0011	679	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	a0012	679	1	1	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRMDA_chr10_75426624_76565168	0/0	a0001	226	40	30	8	2	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	a0002	226	3	3	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	a0003	226	3	3	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRP10_chr14_22866740_22886713	1/1	a0001	713	334	81	79	121	10	41	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0002	713	7	0	0	7	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0003	713	5	5	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0004	713	4	4	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0005	713	3	0	0	3	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0006	713	3	0	0	3	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0007	713	2	0	0	2	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0008	713	2	2	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0009	713	2	2	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0010	713	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0011	713	1	0	1	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0012	713	1	0	0	0	0	1	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0013	713	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0014	713	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	a0015	713	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP11_chr6_149813757_149869359	0/1	a0001	500	185	26	31	101	8	18	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	1/0	a0002	500	125	50	23	29	6	16	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	a0003	500	18	11	0	3	0	4	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	a0004	500	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	a0005	500	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	a0006	500	1	0	0	1	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	a0007	500	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	a0008	500	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	a0009	500	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP12_chr8_104484236_104594258	1/1	a0001	859	309	65	66	132	14	30	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	a0002	859	6	6	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258