JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRP12_chr8_104484236_104594258	0/0	a0003	859	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	a0004	859	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	a0005	859	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP1B_chr2_140226423_142136016	0/0	a0001	4599	23	21	2	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	a0002	4599	2	2	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	a0003	4599	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	a0004	4599	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	a0005	4599	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1_chr12_57123483_57218361	0/1	a0001	4544	252	74	45	102	7	23	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	1/0	a0002	4544	4	3	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0003	4544	3	3	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0004	4544	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0005	4544	2	0	1	0	1	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0006	4544	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0007	2504	1	0	0	0	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0008	4544	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0009	4544	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0010	4544	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0011	4544	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0012	4603	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0013	4544	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0014	4544	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0015	4544	1	0	0	0	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0016	4544	1	0	0	0	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0017	4544	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	a0018	4544	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP2BP_chr4_185358872_185400924	1/1	a0001	347	346	95	66	128	14	41	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	a0002	347	1	0	0	0	0	1	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	a0003	347	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2_chr2_169122109_169367534	0/0	a0001	4655	49	4	16	19	3	7	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/1	a0002	4655	25	2	4	8	4	6	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0003	4655	24	20	3	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0004	4655	13	3	2	8	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0005	4655	11	8	1	1	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0006	4655	10	0	2	5	2	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0007	4655	10	1	0	6	2	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0008	4655	9	2	0	7	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	1/0	a0009	4655	8	0	0	4	1	2	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0010	4655	6	0	2	4	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0011	4655	4	1	0	1	0	2	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0012	4655	4	4	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0013	4655	4	2	0	1	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0014	4655	3	3	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0015	4655	3	0	1	2	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0016	4655	3	0	0	3	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0017	4655	2	2	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0018	4655	2	2	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0019	4655	2	0	0	2	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0020	4655	2	2	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	a0021	4655	2	2	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534