JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRP3_chr19_33189330_33213864	1/0	a0002	770	132	30	10	83	4	4	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0003	770	23	5	3	7	1	7	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0004	770	4	4	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0005	770	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0006	770	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0007	770	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0008	770	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0009	770	1	0	1	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0010	770	1	0	0	0	0	1	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0011	770	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0012	770	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0013	770	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	a0014	770	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP4_chr11_46851717_46923550	0/0	a0001	1905	76	15	15	32	3	11	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/1	a0002	1905	71	1	16	47	1	5	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	1/0	a0003	1905	48	40	3	0	1	3	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0004	1905	24	5	6	11	0	2	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0005	1905	17	16	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0006	1905	12	1	2	6	1	2	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0007	1905	5	0	3	0	0	2	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0008	1905	4	0	0	4	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0009	1905	3	2	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0010	1905	2	1	0	0	0	1	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0011	1905	2	2	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0012	1905	2	1	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0013	1905	1	0	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0014	1905	1	0	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0015	1905	1	0	0	1	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0016	1905	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0017	1905	1	0	0	1	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0018	1905	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0019	1905	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0020	1905	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0021	1905	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	a0022	1905	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP5_chr11_68307591_68454275	1/1	a0001	1615	142	67	26	36	6	5	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0002	1615	25	2	3	20	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0003	1616	17	11	5	0	1	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0004	1615	6	0	0	6	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0005	1615	5	0	5	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0006	1615	2	0	2	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0007	1615	2	2	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0008	1616	2	1	1	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0009	1615	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0010	1615	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0011	1611	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0012	1615	1	1	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0013	1615	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0014	1615	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0015	1615	1	0	0	0	1	0	copy fasta	LRP5	chr11	68307591	68454275