JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRP5_chr11_68307591_68454275	0/0	a0016	1615	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0017	1616	1	0	1	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0018	1616	1	0	0	0	0	1	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	a0019	1615	1	0	1	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP6_chr12_12111025_12272044	0/1	a0001	1613	207	62	42	71	8	23	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	1/0	a0002	1613	36	7	8	13	4	3	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	a0003	1613	8	7	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	a0004	1613	4	0	0	4	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	a0005	1613	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	a0006	1613	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	a0007	1613	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	a0008	1613	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	a0009	1613	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	a0010	1613	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP8_chr1_53237364_53333070	0/0	a0001	963	168	79	17	55	2	15	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	1/0	a0002	963	89	3	26	47	1	11	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	a0003	963	18	2	5	6	3	2	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/1	a0004	963	7	0	3	0	1	2	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	a0005	964	3	0	1	1	1	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	a0006	962	3	1	0	2	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	a0007	963	2	0	2	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	a0008	963	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	a0009	963	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	a0010	963	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	a0011	963	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	a0012	963	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	a0013	963	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRPAP1_chr4_3498612_3537422	1/1	a0001	357	373	79	70	168	11	43	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0002	357	18	5	5	5	0	3	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0003	357	5	4	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0004	357	5	0	3	0	0	2	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0005	357	4	4	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0006	357	3	0	2	0	1	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0007	357	2	0	0	0	0	2	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0008	357	2	2	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0009	357	2	0	2	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0010	357	2	0	0	2	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0011	357	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0012	357	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0013	357	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	a0014	357	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPPRC_chr2_43881224_44000989	1/1	a0001	1394	305	49	70	137	13	34	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0002	1394	15	10	0	5	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0003	1394	11	9	2	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0004	1394	10	10	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0005	1394	2	1	1	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0006	1394	2	0	0	2	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0007	1394	2	0	1	0	1	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0008	1394	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0009	1394	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989