JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRPPRC_chr2_43881224_44000989	0/0	a0010	1394	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0011	1394	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0012	1394	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0013	1394	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0014	1394	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0015	1394	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0016	1394	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0017	1394	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	a0018	1394	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRR1_chr14_49593940_49619672	1/1	a0001	414	246	63	50	86	11	34	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	a0002	414	51	20	20	5	3	3	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	a0003	414	9	9	0	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	a0004	414	2	2	0	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	a0005	414	1	0	0	0	0	1	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	a0006	414	1	0	0	1	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	a0007	414	1	0	1	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	a0008	328	1	0	1	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRRC10B_chr11_61503749_61516018	1/1	a0001	292	410	98	72	180	14	44	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	a0002	292	1	0	0	0	0	1	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	a0003	292	1	0	0	0	0	1	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10_chr12_69603564_69615907	1/1	a0001	277	425	95	73	201	14	40	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	a0002	277	1	0	0	1	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	a0003	277	1	0	1	0	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	a0004	277	1	0	0	1	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	a0005	277	1	1	0	0	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	a0006	277	1	0	0	1	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC14B_chr5_186495_201334	1/1	a0001	514	450	92	87	209	16	44	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0002	514	4	0	0	4	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0003	514	3	3	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0004	514	2	2	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0005	514	2	2	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0006	514	2	0	0	0	0	2	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0007	514	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0008	514	1	0	1	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0009	514	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0010	514	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0011	514	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0012	514	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	a0013	514	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14_chr8_144512992_144530172	1/1	a0001	493	411	97	82	176	16	38	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	a0002	493	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	a0003	493	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	a0004	493	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC15_chr3_194350249_194374743	1/0	a0001	581	280	81	47	105	11	35	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/1	a0002	581	49	5	12	26	1	4	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	a0003	581	15	10	3	0	0	2	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	a0004	581	4	0	0	3	0	1	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	a0005	581	2	0	0	2	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	a0006	581	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	a0007	581	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743