JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC15_chr3_194350249_194374743	0/0	a0008	581	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	a0009	581	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	a0010	581	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	a0011	581	1	0	1	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	a0012	581	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	a0013	581	1	0	1	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC17_chr7_102908000_102950111	0/1	a0001	440	192	39	47	74	12	19	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	a0002	441	97	18	12	52	3	12	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	1/0	a0003	441	59	26	2	29	0	1	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	a0004	441	42	0	2	32	1	7	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	a0005	441	2	2	0	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	a0006	440	1	0	0	0	0	1	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	a0007	441	1	1	0	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	a0008	441	1	0	0	1	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	a0009	440	1	1	0	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	a0010	440	1	1	0	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	a0011	441	1	0	1	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC18_chr10_48904480_48944840	0/0	a0001	261	187	12	21	127	9	18	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	1/1	a0002	261	155	35	39	55	4	20	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	a0003	261	40	30	9	0	1	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	a0004	261	19	2	6	0	4	7	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	a0005	261	13	10	3	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	a0006	261	2	2	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	a0007	261	1	0	0	0	0	1	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	a0008	261	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	a0009	261	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	a0010	261	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC19_chr9_26988136_27010672	1/1	a0001	370	368	88	73	141	17	47	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	a0002	370	15	2	4	5	1	3	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	a0003	370	3	3	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	a0004	370	2	0	0	2	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	a0005	370	1	0	1	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	a0006	370	1	1	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC1_chr6_53790005_53929125	1/1	a0001	524	309	90	57	114	10	36	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	a0002	524	52	0	19	29	2	2	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	a0003	524	3	3	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	a0004	524	3	0	0	3	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	a0005	524	2	0	0	2	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	a0006	524	1	1	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC20_chr10_70293975_70387625	1/1	a0001	184	376	89	76	157	12	40	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	a0002	184	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	a0003	184	1	0	0	1	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC23_chr12_6899822_6919229	1/0	a0001	343	158	17	38	68	9	25	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/1	a0002	343	109	39	16	32	5	16	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	a0003	343	25	0	0	24	0	1	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	a0004	343	15	11	2	2	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	a0005	343	5	5	0	0	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	a0006	343	2	0	0	2	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	a0007	343	1	0	0	1	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	a0008	343	1	0	0	1	0	0	copy fasta	LRRC23	chr12	6899822	6919229