JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC24_chr8_144517388_144532033	1/0	a0001	513	210	73	31	81	7	17	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/1	a0002	513	167	8	51	72	9	26	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	a0003	513	9	9	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	a0004	513	3	3	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	a0005	513	2	2	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	a0006	513	2	2	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	a0007	513	1	0	0	1	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	a0008	513	1	1	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	a0009	513	1	0	0	1	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	a0010	513	1	0	0	1	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	a0011	513	1	0	0	0	0	1	copy fasta	LRRC24	chr8	144517388	144532033
LRRC25_chr19_18386137_18402622	0/1	a0001	305	295	82	56	114	11	31	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	1/0	a0002	305	130	11	17	79	7	15	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	a0003	305	6	6	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	a0004	305	1	0	0	1	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	a0005	305	1	0	1	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	a0006	305	1	1	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC26_chr9_137163758_137175051	1/0	a0001	334	307	83	53	138	12	20	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/1	a0002	334	52	4	19	2	5	21	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	a0003	334	34	1	8	19	1	5	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	a0004	334	2	2	0	0	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	a0005	334	2	0	2	0	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	a0006	334	2	0	0	2	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	a0007	334	2	2	0	0	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	a0008	334	1	1	0	0	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	a0009	334	1	1	0	0	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	a0010	334	1	0	0	1	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC27_chr10_132327193_132386508	1/1	a0001	530	272	79	58	101	11	21	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	a0002	530	11	4	3	0	3	1	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	a0003	530	2	0	2	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	a0004	530	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	a0005	368	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	a0006	530	1	0	1	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	a0007	530	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	a0008	530	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC28_chr15_99246481_99395729	1/1	a0001	367	320	79	49	142	8	40	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	a0002	367	10	9	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	a0003	367	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	a0004	367	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC2_chr3_46510385_46571302	1/1	a0001	371	251	79	46	102	5	17	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	a0002	371	54	4	10	24	4	12	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	a0003	371	31	1	8	14	1	7	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	a0004	371	19	3	4	12	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	a0005	371	3	3	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	a0006	371	2	0	0	0	0	2	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	a0007	371	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	a0008	371	1	0	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	a0009	371	1	0	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	a0010	371	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC30_chr18_7226089_7237044	1/1	a0001	301	453	94	77	218	12	50	copy fasta	LRRC30	chr18	7226089	7237044