JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC30_chr18_7226089_7237044	0/0	a0002	301	2	2	0	0	0	0	copy fasta	LRRC30	chr18	7226089	7237044
LRRC30_chr18_7226089_7237044	0/0	a0003	301	1	0	1	0	0	0	copy fasta	LRRC30	chr18	7226089	7237044
LRRC31_chr3_169834172_169874935	1/0	a0001	552	266	82	46	93	9	35	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/1	a0002	552	22	0	10	6	3	2	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	a0003	552	17	0	2	15	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	a0004	552	6	0	0	6	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	a0005	552	4	4	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	a0006	487	2	0	0	0	0	2	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	a0007	487	1	0	0	0	0	1	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	a0008	552	1	1	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	a0009	552	1	1	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	a0010	552	1	1	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	a0011	552	1	1	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC32_chr11_76652524_76675747	1/1	a0001	662	402	75	79	186	15	45	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	a0002	662	23	0	0	20	1	2	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	a0003	662	20	19	1	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	a0004	662	2	2	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	a0005	662	2	0	0	2	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	a0006	662	2	0	2	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	a0007	662	1	0	0	0	0	1	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	a0008	662	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	a0009	662	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC34_chr3_169788003_169817904	1/1	a0001	464	155	45	28	57	5	18	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	a0002	464	103	3	14	75	1	10	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	a0003	464	29	24	1	2	0	2	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	a0004	464	18	1	3	13	0	1	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	a0005	329	7	6	1	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	a0006	464	5	4	1	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	a0007	464	2	0	2	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	a0008	464	1	0	0	1	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	a0009	464	1	0	0	0	0	1	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	a0010	464	1	1	0	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC36_chr16_67321815_67390204	1/1	a0001	754	130	34	32	36	7	19	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	a0002	754	35	33	2	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	a0003	754	25	18	3	0	1	3	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	a0004	754	1	0	1	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	a0005	650	1	1	0	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	a0006	754	1	1	0	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	a0007	754	1	1	0	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC37A2_chr17_46507468_46560646	0/0	a0001	1700	18	5	3	3	3	4	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0002	1700	14	1	6	5	1	1	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0003	1700	13	0	4	6	3	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0004	1700	11	1	4	0	2	4	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0005	1700	10	10	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0006	1700	9	3	3	3	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0007	1700	4	2	1	0	0	1	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0008	1700	4	0	2	0	0	2	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0009	1700	2	0	2	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0010	1700	2	2	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0011	1700	2	0	0	2	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646