JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC37A2_chr17_46507468_46560646	0/0	a0012	1700	2	1	1	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0013	1700	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0014	1700	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/1	a0015	1700	1	0	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0016	1700	1	0	0	0	1	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0017	1700	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0018	1700	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0019	1700	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0020	1700	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0021	1700	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0022	1700	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0023	1700	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0024	1700	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0025	1700	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0026	1700	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0027	1700	1	0	1	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0028	1700	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0029	1700	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	a0030	1700	1	0	1	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A3_chr17_64849130_64924478	1/1	a0001	1634	77	23	17	26	0	9	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0002	1634	15	14	1	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0003	1634	8	7	1	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0004	1634	5	5	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0005	1634	5	4	1	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0006	1634	3	3	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0007	1634	3	3	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0008	1634	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0009	1634	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0010	1634	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0011	1634	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0012	1634	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0013	1634	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0014	1634	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0015	1634	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0016	1634	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0017	1634	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0018	1634	1	0	0	1	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0019	1634	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0020	1634	1	0	0	1	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0021	1634	1	0	0	0	0	1	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0022	1634	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	a0023	1634	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A_chr17_46290131_46342794	0/0	a0001	1700	21	9	0	11	0	1	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	1/0	a0002	1700	11	10	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0003	1700	10	1	2	6	0	1	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0004	1700	2	1	0	1	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0005	1700	1	1	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0006	1700	1	0	0	1	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0007	1700	1	0	1	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0008	1700	1	0	0	1	0	0	copy fasta	LRRC37A	chr17	46290131	46342794