Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD34B_chr5_80551755_80575280	0/1	a0001	514	360	88	65	154	11	41	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	1/0	a0002	514	21	2	8	0	5	5	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	a0003	514	4	0	2	0	2	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	a0004	514	3	0	0	3	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	a0005	514	1	0	1	0	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	a0006	514	1	1	0	0	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	a0007	514	1	1	0	0	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	a0008	514	1	0	0	1	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34C_chr15_79277722_79303239	1/1	a0001	535	422	92	83	184	16	45	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	a0002	535	6	0	1	5	0	0	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	a0003	535	1	0	0	0	0	1	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	a0004	535	1	0	0	1	0	0	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD35_chr1_145861564_145890866	0/1	a0001	1001	216	47	37	105	4	22	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0002	1001	62	8	24	12	13	5	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	1/0	a0003	1001	52	1	7	32	1	10	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0004	1001	18	17	1	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0005	1001	7	0	0	7	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0006	1001	7	7	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0007	1001	6	6	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0008	1001	5	5	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0009	1001	3	0	0	0	0	3	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0010	1001	3	2	1	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0011	1001	3	0	0	3	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0012	1001	2	0	0	2	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0013	503	2	0	0	2	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0014	1001	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0015	1001	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0016	1001	1	1	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0017	1001	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0018	1001	1	0	0	0	0	1	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0019	1001	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0020	743	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0021	1001	1	0	1	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0022	1001	1	1	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0023	1001	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0024	1001	1	0	1	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0025	1001	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0026	1001	1	1	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	a0027	1001	1	0	0	0	0	1	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD36C_chr2_95844548_95996824	0/0	a0001	2119	89	29	13	39	1	7	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	a0002	2085	48	5	10	29	3	1	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	a0003	2119	39	0	7	20	2	10	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	a0004	2085	34	0	11	19	0	4	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	a0005	2085	11	9	0	2	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	a0006	2017	6	0	2	4	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	a0007	2119	6	6	0	0	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	a0008	2085	6	0	4	2	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	a0009	2119	5	1	1	2	0	1	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	a0010	2119	3	0	3	0	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	a0011	2119	3	0	0	1	0	2	copy fasta	ANKRD36C	chr2	95844548	95996824