JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC37A_chr17_46290131_46342794	0/0	a0009	1700	1	0	0	1	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0010	1700	1	1	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0011	1700	1	0	0	1	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0012	1700	1	0	1	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0013	1700	1	1	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0014	1700	1	1	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	a0015	1700	1	1	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37B_chr17_32002383_32058487	1/1	a0001	865	188	69	40	57	4	16	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0002	865	20	0	9	0	4	7	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0003	865	17	0	2	8	0	7	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0004	865	4	4	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0005	865	2	2	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0006	865	2	2	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0007	865	2	0	2	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0008	865	1	1	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0009	865	1	0	1	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0010	865	1	0	0	0	0	1	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0011	865	1	0	0	0	0	1	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0012	865	1	1	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0013	865	1	1	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	a0014	865	1	0	0	1	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC38_chr1_13469973_13519003	1/0	a0001	294	220	43	54	82	12	28	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	a0002	294	199	31	22	120	6	20	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	a0003	294	23	23	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/1	a0004	294	2	0	0	0	0	1	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	a0005	294	1	0	0	1	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	a0006	294	1	0	0	0	0	1	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	a0007	294	1	1	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	a0008	294	1	0	0	1	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC39_chr1_100143448_100183256	1/1	a0001	335	281	78	57	96	14	34	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	a0002	334	5	4	1	0	0	0	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	a0003	335	2	2	0	0	0	0	copy fasta	LRRC39	chr1	100143448	100183256
LRRC3B_chr3_26617772_26715776	1/1	a0001	259	370	88	70	166	12	32	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3C_chr17_39922732_39949999	1/1	a0001	275	390	90	62	180	17	39	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	a0002	275	6	0	0	6	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	a0003	275	4	0	3	0	1	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	a0004	275	1	1	0	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	a0005	275	1	0	0	0	0	1	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	a0006	275	1	1	0	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	a0007	275	1	0	1	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3_chr21_44450510_44467196	1/1	a0001	257	413	86	83	184	12	46	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	a0002	257	9	8	1	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	a0003	257	2	0	0	2	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	a0004	257	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	a0005	257	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC40_chr1_70139805_70210579	1/1	a0001	602	311	53	62	146	9	39	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	a0002	602	2	0	2	0	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	a0003	602	2	2	0	0	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	a0004	602	1	0	0	1	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	a0005	602	1	1	0	0	0	0	copy fasta	LRRC40	chr1	70139805	70210579